Wednesday, 29 November 2017

Botany

Botany, also called plant science(s), plant biology or phytology, is the science of plant life and a branch of biology. A botanist or plant scientist is a scientist who specialises in this field. The term "botany" comes from the Ancient Greek word βοτάνη (botanē) meaning "pasture", "grass", or "fodder"; βοτάνη is in turn derived from βόσκειν (boskein), "to feed" or "to graze".[1][2][3] Traditionally, botany has also included the study of fungi and algae by mycologists and phycologists respectively, with the study of these three groups of organisms remaining within the sphere of interest of the International Botanical Congress. Nowadays, botanists (in the strict sense) study approximately 410,000 species of land plants of which some 391,000 species are vascular plants (including ca 369,000 species of flowering plants),[4] and ca 20,000 are bryophytes.[5]

Botany originated in prehistory as herbalism with the efforts of early humans to identify – and later cultivate – edible, medicinal and poisonous plants, making it one of the oldest branches of science. Medieval physic gardens, often attached to monasteries, contained plants of medical importance. They were forerunners of the first botanical gardens attached to universities, founded from the 1540s onwards. One of the earliest was the Padua botanical garden. These gardens facilitated the academic study of plants. Efforts to catalogue and describe their collections were the beginnings of plant taxonomy, and led in 1753 to the binomial system of Carl Linnaeus that remains in use to this day.

In the 19th and 20th centuries, new techniques were developed for the study of plants, including methods of optical microscopy and live cell imaging, electron microscopy, analysis of chromosome number, plant chemistry and the structure and function of enzymes and other proteins. In the last two decades of the 20th century, botanists exploited the techniques of molecular genetic analysis, including genomics and proteomics and DNA sequences to classify plants more accurately.

Modern botany is a broad, multidisciplinary subject with inputs from most other areas of science and technology. Research topics include the study of plant structure, growth and differentiation, reproduction, biochemistry and primary metabolism, chemical products, development, diseases, evolutionary relationships, systematics, and plant taxonomy. Dominant themes in 21st century plant science are molecular genetics and epigenetics, which are the mechanisms and control of gene expression during differentiation of plant cells and tissues. Botanical research has diverse applications in providing staple foods, materials such as timber, oil, rubber, fibre and drugs, in modern horticulture, agriculture and forestry, plant propagation, breeding and genetic modification, in the synthesis of chemicals and raw materials for construction and energy production, in environmental management, and the maintenance of biodiversity.

Contents  [hide]
1 History
1.1 Early botany
1.2 Early modern botany
1.3 Late modern botany
2 Scope and importance
2.1 Human nutrition
3 Plant biochemistry
3.1 Medicine and materials
4 Plant ecology
4.1 Plants, climate and environmental change
5 Genetics
5.1 Molecular genetics
5.2 Epigenetics
6 Plant evolution
7 Plant physiology
7.1 Plant hormones
8 Plant anatomy and morphology
9 Systematic botany
10 See also
11 Notes
12 References
12.1 Citations
12.2 Sources
13 External links
History[edit]
Main article: History of botany
Early botany[edit]
engraving of cork cells from Hooke's Micrographia, 1665
An engraving of the cells of cork, from Robert Hooke's Micrographia, 1665
Botany originated as herbalism, the study and use of plants for their medicinal properties.[6] Many records of the Holocene period date early botanical knowledge as far back as 10,000 years ago.[7] This early unrecorded knowledge of plants was discovered in ancient sites of human occupation within Tennessee, which make up much of the Cherokee land today.[7] The early recorded history of botany includes many ancient writings and plant classifications. Examples of early botanical works have been found in ancient texts from India dating back to before 1100 BC,[8][9] in archaic Avestan writings, and in works from China before it was unified in 221 BC.[8][10]

Modern botany traces its roots back to Ancient Greece specifically to Theophrastus (c. 371–287 BC), a student of Aristotle who invented and described many of its principles and is widely regarded in the scientific community as the "Father of Botany".[11] His major works, Enquiry into Plants and On the Causes of Plants, constitute the most important contributions to botanical science until the Middle Ages, almost seventeen centuries later.[11][12]

Another work from Ancient Greece that made an early impact on botany is De Materia Medica, a five-volume encyclopedia about herbal medicine written in the middle of the first century by Greek physician and pharmacologist Pedanius Dioscorides. De Materia Medica was widely read for more than 1,500 years.[13] Important contributions from the medieval Muslim world include Ibn Wahshiyya's Nabatean Agriculture, Abū Ḥanīfa Dīnawarī's (828–896) the Book of Plants, and Ibn Bassal's The Classification of Soils. In the early 13th century, Abu al-Abbas al-Nabati, and Ibn al-Baitar (d. 1248) wrote on botany in a systematic and scientific manner.[14][15][16]

In the mid-16th century, "botanical gardens" were founded in a number of Italian universities – the Padua botanical garden in 1545 is usually considered to be the first which is still in its original location. These gardens continued the practical value of earlier "physic gardens", often associated with monasteries, in which plants were cultivated for medical use. They supported the growth of botany as an academic subject. Lectures were given about the plants grown in the gardens and their medical uses demonstrated. Botanical gardens came much later to northern Europe; the first in England was the University of Oxford Botanic Garden in 1621. Throughout this period, botany remained firmly subordinate to medicine.[17]

German physician Leonhart Fuchs (1501–1566) was one of "the three German fathers of botany", along with theologian Otto Brunfels (1489–1534) and physician Hieronymus Bock (1498–1554) (also called Hieronymus Tragus).[18][19] Fuchs and Brunfels broke away from the tradition of copying earlier works to make original observations of their own. Bock created his own system of plant classification.

Physician Valerius Cordus (1515–1544) authored a botanically and pharmacologically important herbal Historia Plantarum in 1544 and a pharmacopoeia of lasting importance, the Dispensatorium in 1546.[20] Naturalist Conrad von Gesner (1516–1565) and herbalist John Gerard (1545–c. 1611) published herbals covering the medicinal uses of plants. Naturalist Ulisse Aldrovandi (1522–1605) was considered the father of natural history, which included the study of plants. In 1665, using an early microscope, Polymath Robert Hooke discovered cells, a term he coined, in cork, and a short time later in living plant tissue.[21]

Early modern botany[edit]
Further information: Taxonomy (biology) § History of taxonomy
Photograph of a garden
The Linnaean Garden of Linnaeus' residence in Uppsala, Sweden, was planted according to his Systema sexuale.
During the 18th century, systems of plant identification were developed comparable to dichotomous keys, where unidentified plants are placed into taxonomic groups (e.g. family, genus and species) by making a series of choices between pairs of characters. The choice and sequence of the characters may be artificial in keys designed purely for identification (diagnostic keys) or more closely related to the natural or phyletic order of the taxa in synoptic keys.[22] By the 18th century, new plants for study were arriving in Europe in increasing numbers from newly discovered countries and the European colonies worldwide. In 1753 Carl von Linné (Carl Linnaeus) published his Species Plantarum, a hierarchical classification of plant species that remains the reference point for modern botanical nomenclature. This established a standardised binomial or two-part naming scheme where the first name represented the genus and the second identified the species within the genus.[23] For the purposes of identification, Linnaeus's Systema Sexuale classified plants into 24 groups according to the number of their male sexual organs. The 24th group, Cryptogamia, included all plants with concealed reproductive parts, mosses, liverworts, ferns, algae and fungi.[24]

Increasing knowledge of plant anatomy, morphology and life cycles led to the realisation that there were more natural affinities between plants than the artificial sexual system of Linnaeus. Adanson (1763), de Jussieu (1789), and Candolle (1819) all proposed various alternative natural systems of classification that grouped plants using a wider range of shared characters and were widely followed. The Candollean system reflected his ideas of the progression of morphological complexity and the later classification by Bentham and Hooker, which was influential until the mid-19th century, was influenced by Candolle's approach. Darwin's publication of the Origin of Species in 1859 and his concept of common descent required modifications to the Candollean system to reflect evolutionary relationships as distinct from mere morphological similarity.[25]

Botany was greatly stimulated by the appearance of the first "modern" textbook, Matthias Schleiden's Grundzüge der Wissenschaftlichen Botanik, published in English in 1849 as Principles of Scientific Botany.[26] Schleiden was a microscopist and an early plant anatomist who co-founded the cell theory with Theodor Schwann and Rudolf Virchow and was among the first to grasp the significance of the cell nucleus that had been described by Robert Brown in 1831.[27] In 1855, Adolf Fick formulated Fick's laws that enabled the calculation of the rates of molecular diffusion in biological systems.[28]


Echeveria glauca in a Connecticut greenhouse. Botany uses Latin names for identification, here, the specific name glauca means blue.
Late modern botany[edit]
Micropropagation of transgenic plants
Micropropagation of transgenic plants
Building upon the gene-chromosome theory of heredity that originated with Gregor Mendel (1822–1884), August Weismann (1834–1914) proved that inheritance only takes place through gametes. No other cells can pass on inherited characters.[29] The work of Katherine Esau (1898–1997) on plant anatomy is still a major foundation of modern botany. Her books Plant Anatomy and Anatomy of Seed Plants have been key plant structural biology texts for more than half a century.[30][31]

The discipline of plant ecology was pioneered in the late 19th century by botanists such as Eugenius Warming, who produced the hypothesis that plants form communities, and his mentor and successor Christen C. Raunkiær whose system for describing plant life forms is still in use today. The concept that the composition of plant communities such as temperate broadleaf forest changes by a process of ecological succession was developed by Henry Chandler Cowles, Arthur Tansley and Frederic Clements. Clements is credited with the idea of climax vegetation as the most complex vegetation that an environment can support and Tansley introduced the concept of ecosystems to biology.[32][33][34] Building on the extensive earlier work of Alphonse de Candolle, Nikolai Vavilov (1887–1943) produced accounts of the biogeography, centres of origin, and evolutionary history of economic plants.[35]

Particularly since the mid-1960s there have been advances in understanding of the physics of plant physiological processes such as transpiration (the transport of water within plant tissues), the temperature dependence of rates of water evaporation from the leaf surface and the molecular diffusion of water vapour and carbon dioxide through stomatal apertures. These developments, coupled with new methods for measuring the size of stomatal apertures, and the rate of photosynthesis have enabled precise description of the rates of gas exchange between plants and the atmosphere.[36][37] Innovations in statistical analysis by Ronald Fisher,[38] Frank Yates and others at Rothamsted Experimental Station facilitated rational experimental design and data analysis in botanical research.[39] The discovery and identification of the auxin plant hormones by Kenneth V. Thimann in 1948 enabled regulation of plant growth by externally applied chemicals. Frederick Campion Steward pioneered techniques of micropropagation and plant tissue culture controlled by plant hormones.[40] The synthetic auxin 2,4-Dichlorophenoxyacetic acid or 2,4-D was one of the first commercial synthetic herbicides.[41]

20th century developments in plant biochemistry have been driven by modern techniques of organic chemical analysis, such as spectroscopy, chromatography and electrophoresis. With the rise of the related molecular-scale biological approaches of molecular biology, genomics, proteomics and metabolomics, the relationship between the plant genome and most aspects of the biochemistry, physiology, morphology and behaviour of plants can be subjected to detailed experimental analysis.[42] The concept originally stated by Gottlieb Haberlandt in 1902[43] that all plant cells are totipotent and can be grown in vitro ultimately enabled the use of genetic engineering experimentally to knock out a gene or genes responsible for a specific trait, or to add genes such as GFP that report when a gene of interest is being expressed. These technologies enable the biotechnological use of whole plants or plant cell cultures grown in bioreactors to synthesise pesticides, antibiotics or other pharmaceuticals, as well as the practical application of genetically modified crops designed for traits such as improved yield.[44]

Modern morphology recognises a continuum between the major morphological categories of root, stem (caulome), leaf (phyllome) and trichome.[45] Furthermore, it emphasises structural dynamics.[46] Modern systematics aims to reflect and discover phylogenetic relationships between plants.[47][48][49][50] Modern Molecular phylogenetics largely ignores morphological characters, relying on DNA sequences as data. Molecular analysis of DNA sequences from most families of flowering plants enabled the Angiosperm Phylogeny Group to publish in 1998 a phylogeny of flowering plants, answering many of the questions about relationships among angiosperm families and species.[51] The theoretical possibility of a practical method for identification of plant species and commercial varieties by DNA barcoding is the subject of active current research.[52][53]

Scope and importance[edit]
A herbarium specimen of the lady fern, Athyrium filix-femina
Botany involves the recording and description of plants, such as this herbarium specimen of the lady fern Athyrium filix-femina.
The study of plants is vital because they underpin almost all animal life on Earth by generating a large proportion of the oxygen and food that provide humans and other organisms with aerobic respiration with the chemical energy they need to exist. Plants, algae and cyanobacteria are the major groups of organisms that carry out photosynthesis, a process that uses the energy of sunlight to convert water and carbon dioxide[54] into sugars that can be used both as a source of chemical energy and of organic molecules that are used in the structural components of cells.[55] As a by-product of photosynthesis, plants release oxygen into the atmosphere, a gas that is required by nearly all living things to carry out cellular respiration. In addition, they are influential in the global carbon and water cycles and plant roots bind and stabilise soils, preventing soil erosion.[56] Plants are crucial to the future of human society as they provide food, oxygen, medicine, and products for people, as well as creating and preserving soil.[57]

Historically, all living things were classified as either animals or plants[58] and botany covered the study of all organisms not considered animals.[59] Botanists examine both the internal functions and processes within plant organelles, cells, tissues, whole plants, plant populations and plant communities. At each of these levels, a botanist may be concerned with the classification (taxonomy), phylogeny and evolution, structure (anatomy and morphology), or function (physiology) of plant life.[60]

The strictest definition of "plant" includes only the "land plants" or embryophytes, which include seed plants (gymnosperms, including the pines, and flowering plants) and the free-sporing cryptogams including ferns, clubmosses, liverworts, hornworts and mosses. Embryophytes are multicellular eukaryotes descended from an ancestor that obtained its energy from sunlight by photosynthesis. They have life cycles with alternating haploid and diploid phases. The sexual haploid phase of embryophytes, known as the gametophyte, nurtures the developing diploid embryo sporophyte within its tissues for at least part of its life,[61] even in the seed plants, where the gametophyte itself is nurtured by its parent sporophyte.[62] Other groups of organisms that were previously studied by botanists include bacteria (now studied in bacteriology), fungi (mycology) – including lichen-forming fungi (lichenology), non-chlorophyte algae (phycology), and viruses (virology). However, attention is still given to these groups by botanists, and fungi (including lichens) and photosynthetic protists are usually covered in introductory botany courses.[63][64]

Palaeobotanists study ancient plants in the fossil record to provide information about the evolutionary history of plants. Cyanobacteria, the first oxygen-releasing photosynthetic organisms on Earth, are thought to have given rise to the ancestor of plants by entering into an endosymbiotic relationship with an early eukaryote, ultimately becoming the chloroplasts in plant cells. The new photosynthetic plants (along with their algal relatives) accelerated the rise in atmospheric oxygen started by the cyanobacteria, changing the ancient oxygen-free, reducing, atmosphere to one in which free oxygen has been abundant for more than 2 billion years.[65][66]

Among the important botanical questions of the 21st century are the role of plants as primary producers in the global cycling of life's basic ingredients: energy, carbon, oxygen, nitrogen and water, and ways that our plant stewardship can help address the global environmental issues of resource management, conservation, human food security, biologically invasive organisms, carbon sequestration, climate change, and sustainability.[67]

Human nutrition[edit]
Further information: Human nutrition
grains of brown rice, a staple food
The food we eat comes directly or indirectly from plants such as rice.
Virtually all staple foods come either directly from primary production by plants, or indirectly from animals that eat them.[68] Plants and other photosynthetic organisms are at the base of most food chains because they use the energy from the sun and nutrients from the soil and atmosphere, converting them into a form that can be used by animals. This is what ecologists call the first trophic level.[69] The modern forms of the major staple foods, such as maize, rice, wheat and other cereal grasses, pulses, bananas and plantains,[70] as well as flax and cotton grown for their fibres, are the outcome of prehistoric selection over thousands of years from among wild ancestral plants with the most desirable characteristics.[71]

Botanists study how plants produce food and how to increase yields, for example through plant breeding, making their work important to mankind's ability to feed the world and provide food security for future generations.[72] Botanists also study weeds, which are a considerable problem in agriculture, and the biology and control of plant pathogens in agriculture and natural ecosystems.[73] Ethnobotany is the study of the relationships between plants and people. When applied to the investigation of historical plant–people relationships ethnobotany may be referred to as archaeobotany or palaeoethnobotany.[74] Some of the earliest plant-people relationships arose between the indigenous people of Canada in identifying edible plants from inedible plants.[75] This relationship the indigenous people had with plants was recorded by ethnobotanists.[75]

Plant biochemistry[edit]
Plant biochemistry is the study of the chemical processes used by plants. Some of these processes are used in their primary metabolism like the photosynthetic Calvin cycle and crassulacean acid metabolism.[76] Others make specialised materials like the cellulose and lignin used to build their bodies, and secondary products like resins and aroma compounds.

A paper chromatogram of spinach leaf extract showing separation of the various pigments in their chloroplastsPlants make various photosynthetic pigments, some of which can be seen here through paper chromatography.XanthophyllsChlorophyll aChlorophyll b
Plants and various other groups of photosynthetic eukaryotes collectively known as "algae" have unique organelles known as chloroplasts. Chloroplasts are thought to be descended from cyanobacteria that formed endosymbiotic relationships with ancient plant and algal ancestors. Chloroplasts and cyanobacteria contain the blue-green pigment chlorophyll a.[77] Chlorophyll a (as well as its plant and green algal-specific cousin chlorophyll b)[a] absorbs light in the blue-violet and orange/red parts of the spectrum while reflecting and transmitting the green light that we see as the characteristic colour of these organisms. The energy in the red and blue light that these pigments absorb is used by chloroplasts to make energy-rich carbon compounds from carbon dioxide and water by oxygenic photosynthesis, a process that generates molecular oxygen (O2) as a by-product.

The Calvin cycle (Interactive diagram) The Calvin cycle incorporates carbon dioxide into sugar molecules.
The Calvin cycle (Interactive diagram) The Calvin cycle incorporates carbon dioxide into sugar molecules.
Calvin cycle background.svg Ribulose 1,5-biphosphate.svgRuBisCoCarbon dioxide molecule.svg3-phosphoglycerate molecule.svg3-phosphoglycerate molecule.svgAdenosine triphosphate.svgAdenosine diphosphate.svg1,3-biphosphoglycerate.svgNADPH icon.svgInorganic phosphate group.svgNADP+.svgGlyceraldehyde 3-phosphate.svgRibulose 5-phosphate molecule.svgAdenosine triphosphate.svgAdenosine diphosphate.svgCarbon fixationReduction3-phosphoglycerate3-phosphoglycerateCarbon dioxide1,3-biphosphoglycerateGlyceraldehyde-3-phosphate
(G3P)Inorganic phosphateRibulose 5-phosphateRibulose-1,5-bisphosphateEdit · Source image
The light energy captured by chlorophyll a is initially in the form of electrons (and later a proton gradient) that's used to make molecules of ATP and NADPH which temporarily store and transport energy. Their energy is used in the light-independent reactions of the Calvin cycle by the enzyme rubisco to produce molecules of the 3-carbon sugar glyceraldehyde 3-phosphate (G3P). Glyceraldehyde 3-phosphate is the first product of photosynthesis and the raw material from which glucose and almost all other organic molecules of biological origin are synthesised. Some of the glucose is converted to starch which is stored in the chloroplast.[81] Starch is the characteristic energy store of most land plants and algae, while inulin, a polymer of fructose is used for the same purpose in the sunflower family Asteraceae. Some of the glucose is converted to sucrose (common table sugar) for export to the rest of the plant.

Unlike in animals (which lack chloroplasts), plants and their eukaryote relatives have delegated many biochemical roles to their chloroplasts, including synthesising all their fatty acids,[82][83] and most amino acids.[84] The fatty acids that chloroplasts make are used for many things, such as providing material to build cell membranes out of and making the polymer cutin which is found in the plant cuticle that protects land plants from drying out. [85]

Plants synthesise a number of unique polymers like the polysaccharide molecules cellulose, pectin and xyloglucan[86] from which the land plant cell wall is constructed.[87] Vascular land plants make lignin, a polymer used to strengthen the secondary cell walls of xylem tracheids and vessels to keep them from collapsing when a plant sucks water through them under water stress. Lignin is also used in other cell types like sclerenchyma fibres that provide structural support for a plant and is a major constituent of wood. Sporopollenin is a chemically resistant polymer found in the outer cell walls of spores and pollen of land plants responsible for the survival of early land plant spores and the pollen of seed plants in the fossil record. It is widely regarded as a marker for the start of land plant evolution during the Ordovician period.[88] The concentration of carbon dioxide in the atmosphere today is much lower than it was when plants emerged onto land during the Ordovician and Silurian periods. Many monocots like maize and the pineapple and some dicots like the Asteraceae have since independently evolved[89] pathways like Crassulacean acid metabolism and the C4 carbon fixation pathway for photosynthesis which avoid the losses resulting from photorespiration in the more common C3 carbon fixation pathway. These biochemical strategies are unique to land plants.

Medicine and materials[edit]
Plantation worker tapping a rubber tree
Tapping a rubber tree in Thailand
Phytochemistry is a branch of plant biochemistry primarily concerned with the chemical substances produced by plants during secondary metabolism.[90] Some of these compounds are toxins such as the alkaloid coniine from hemlock. Others, such as the essential oils peppermint oil and lemon oil are useful for their aroma, as flavourings and spices (e.g., capsaicin), and in medicine as pharmaceuticals as in opium from opium poppies. Many medicinal and recreational drugs, such as tetrahydrocannabinol (active ingredient in cannabis), caffeine, morphine and nicotine come directly from plants. Others are simple derivatives of botanical natural products. For example, the pain killer aspirin is the acetyl ester of salicylic acid, originally isolated from the bark of willow trees,[91] and a wide range of opiate painkillers like heroin are obtained by chemical modification of morphine obtained from the opium poppy.[92] Popular stimulants come from plants, such as caffeine from coffee, tea and chocolate, and nicotine from tobacco. Most alcoholic beverages come from fermentation of carbohydrate-rich plant products such as barley (beer), rice (sake) and grapes (wine).[93] Native Americans have used various plants as ways of treating illness or disease for thousands of years.[94] This knowledge Native Americans have on plants has been recorded by enthnobotanists and then in turn has been used by pharmaceutical companies as a way of drug discovery.[95]

Plants can synthesise useful coloured dyes and pigments such as the anthocyanins responsible for the red colour of red wine, yellow weld and blue woad used together to produce Lincoln green, indoxyl, source of the blue dye indigo traditionally used to dye denim and the artist's pigments gamboge and rose madder. Sugar, starch, cotton, linen, hemp, some types of rope, wood and particle boards, papyrus and paper, vegetable oils, wax, and natural rubber are examples of commercially important materials made from plant tissues or their secondary products. Charcoal, a pure form of carbon made by pyrolysis of wood, has a long history as a metal-smelting fuel, as a filter material and adsorbent and as an artist's material and is one of the three ingredients of gunpowder. Cellulose, the world's most abundant organic polymer,[96] can be converted into energy, fuels, materials and chemical feedstock. Products made from cellulose include rayon and cellophane, wallpaper paste, biobutanol and gun cotton. Sugarcane, rapeseed and soy are some of the plants with a highly fermentable sugar or oil content that are used as sources of biofuels, important alternatives to fossil fuels, such as biodiesel.[97] Sweetgrass was used by NativeAmericanse to ward of bugs like mosquitoes.[98] These bug repelling properties of sweetgrass were later found by the American Chemical Society in the molecules phytol and coumarin.[98]

Plant ecology[edit]
Main article: Plant ecology

Parker Method also called the loop method for analyzing vegetation, useful for quantitatively measuring species and cover over time and changes from grazing, wildfires and invasive species. Demonstrated by American botanist Thayne Tuason and an assistant.
Plant ecology is the science of the functional relationships between plants and their habitats—the environments where they complete their life cycles. Plant ecologists study the composition of local and regional floras, their biodiversity, genetic diversity and fitness, the adaptation of plants to their environment, and their competitive or mutualistic interactions with other species.[99] Some ecologists even rely on empirical data from indigenous people that is gathered by ethnobotanists.[100] This information can relay a great deal of information on how the land once was thousands of years ago and how it has changed over that time.[100] The goals of plant ecology are to understand the causes of their distribution patterns, productivity, environmental impact, evolution, and responses to environmental change.[101]

Plants depend on certain edaphic (soil) and climatic factors in their environment but can modify these factors too. For example, they can change their environment's albedo, increase runoff interception, stabilise mineral soils and develop their organic content, and affect local temperature. Plants compete with other organisms in their ecosystem for resources.[102][103] They interact with their neighbours at a variety of spatial scales in groups, populations and communities that collectively constitute vegetation. Regions with characteristic vegetation types and dominant plants as well as similar abiotic and biotic factors, climate, and geography make up biomes like tundra or tropical rainforest.[104]

Colour photograph of roots of Medicago italica, showing root nodules
The nodules of Medicago italica contain the nitrogen fixing bacterium Sinorhizobium meliloti. The plant provides the bacteria with nutrients and an anaerobic environment, and the bacteria fix nitrogen for the plant.[105]
Herbivores eat plants, but plants can defend themselves and some species are parasitic or even carnivorous. Other organisms form mutually beneficial relationships with plants. For example, mycorrhizal fungi and rhizobia provide plants with nutrients in exchange for food, ants are recruited by ant plants to provide protection,[106] honey bees, bats and other animals pollinate flowers[107][108] and humans and other animals[109] act as dispersal vectors to spread spores and seeds.

Plants, climate and environmental change[edit]
Plant responses to climate and other environmental changes can inform our understanding of how these changes affect ecosystem function and productivity. For example, plant phenology can be a useful proxy for temperature in historical climatology, and the biological impact of climate change and global warming. Palynology, the analysis of fossil pollen deposits in sediments from thousands or millions of years ago allows the reconstruction of past climates.[110] Estimates of atmospheric CO2 concentrations since the Palaeozoic have been obtained from stomatal densities and the leaf shapes and sizes of ancient land plants.[111] Ozone depletion can expose plants to higher levels of ultraviolet radiation-B (UV-B), resulting in lower growth rates.[112] Moreover, information from studies of community ecology, plant systematics, and taxonomy is essential to understanding vegetation change, habitat destruction and species extinction.[113]

Genetics[edit]
Main article: Plant genetics
A Punnett square depicting a cross between two pea plants heterozygous for purple (B) and white (b) blossoms
A Punnett square depicting a cross between two pea plants heterozygous for purple (B) and white (b) blossoms
Inheritance in plants follows the same fundamental principles of genetics as in other multicellular organisms. Gregor Mendel discovered the genetic laws of inheritance by studying inherited traits such as shape in Pisum sativum (peas). What Mendel learned from studying plants has had far reaching benefits outside of botany. Similarly, "jumping genes" were discovered by Barbara McClintock while she was studying maize.[114] Nevertheless, there are some distinctive genetic differences between plants and other organisms.

Species boundaries in plants may be weaker than in animals, and cross species hybrids are often possible. A familiar example is peppermint, Mentha × piperita, a sterile hybrid between Mentha aquatica and spearmint, Mentha spicata.[115] The many cultivated varieties of wheat are the result of multiple inter- and intra-specific crosses between wild species and their hybrids.[116] Angiosperms with monoecious flowers often have self-incompatibility mechanisms that operate between the pollen and stigma so that the pollen either fails to reach the stigma or fails to germinate and produce male gametes.[117] This is one of several methods used by plants to promote outcrossing.[118] In many land plants the male and female gametes are produced by separate individuals. These species are said to be dioecious when referring to vascular plant sporophytes and dioicous when referring to bryophyte gametophytes.[119]

Unlike in higher animals, where parthenogenesis is rare, asexual reproduction may occur in plants by several different mechanisms. The formation of stem tubers in potato is one example. Particularly in arctic or alpine habitats, where opportunities for fertilisation of flowers by animals are rare, plantlets or bulbs, may develop instead of flowers, replacing sexual reproduction with asexual reproduction and giving rise to clonal populations genetically identical to the parent. This is one of several types of apomixis that occur in plants. Apomixis can also happen in a seed, producing a seed that contains an embryo genetically identical to the parent.[120]

Most sexually reproducing organisms are diploid, with paired chromosomes, but doubling of their chromosome number may occur due to errors in cytokinesis. This can occur early in development to produce an autopolyploid or partly autopolyploid organism, or during normal processes of cellular differentiation to produce some cell types that are polyploid (endopolyploidy), or during gamete formation. An allopolyploid plant may result from a hybridisation event between two different species. Both autopolyploid and allopolyploid plants can often reproduce normally, but may be unable to cross-breed successfully with the parent population because there is a mismatch in chromosome numbers. These plants that are reproductively isolated from the parent species but live within the same geographical area, may be sufficiently successful to form a new species.[121] Some otherwise sterile plant polyploids can still reproduce vegetatively or by seed apomixis, forming clonal populations of identical individuals.[121] Durum wheat is a fertile tetraploid allopolyploid, while bread wheat is a fertile hexaploid. The commercial banana is an example of a sterile, seedless triploid hybrid. Common dandelion is a triploid that produces viable seeds by apomictic seed.

As in other eukaryotes, the inheritance of endosymbiotic organelles like mitochondria and chloroplasts in plants is non-Mendelian. Chloroplasts are inherited through the male parent in gymnosperms but often through the female parent in flowering plants.[122]

Molecular genetics[edit]
Further information: Molecular genetics
Flowers of Arabidopsis thaliana, the most important model plant and the first to have its genome sequenced
Thale cress, Arabidopsis thaliana, the first plant to have its genome sequenced, remains the most important model organism.
A considerable amount of new knowledge about plant function comes from studies of the molecular genetics of model plants such as the Thale cress, Arabidopsis thaliana, a weedy species in the mustard family (Brassicaceae).[90] The genome or hereditary information contained in the genes of this species is encoded by about 135 million base pairs of DNA, forming one of the smallest genomes among flowering plants. Arabidopsis was the first plant to have its genome sequenced, in 2000.[123] The sequencing of some other relatively small genomes, of rice (Oryza sativa)[124] and Brachypodium distachyon,[125] has made them important model species for understanding the genetics, cellular and molecular biology of cereals, grasses and monocots generally.

Model plants such as Arabidopsis thaliana are used for studying the molecular biology of plant cells and the chloroplast. Ideally, these organisms have small genomes that are well known or completely sequenced, small stature and short generation times. Corn has been used to study mechanisms of photosynthesis and phloem loading of sugar in C4 plants.[126] The single celled green alga Chlamydomonas reinhardtii, while not an embryophyte itself, contains a green-pigmented chloroplast related to that of land plants, making it useful for study.[127] A red alga Cyanidioschyzon merolae has also been used to study some basic chloroplast functions.[128] Spinach,[129] peas,[130] soybeans and a moss Physcomitrella patens are commonly used to study plant cell biology.[131]

Agrobacterium tumefaciens, a soil rhizosphere bacterium, can attach to plant cells and infect them with a callus-inducing Ti plasmid by horizontal gene transfer, causing a callus infection called crown gall disease. Schell and Van Montagu (1977) hypothesised that the Ti plasmid could be a natural vector for introducing the Nif gene responsible for nitrogen fixation in the root nodules of legumes and other plant species.[132] Today, genetic modification of the Ti plasmid is one of the main techniques for introduction of transgenes to plants and the creation of genetically modified crops.

Epigenetics[edit]
Main article: Epigenetics
Epigenetics is the study of heritable changes in gene function that cannot be explained by changes in the underlying DNA sequence[133] but cause the organism's genes to behave (or "express themselves") differently.[134] One example of epigenetic change is the marking of the genes by DNA methylation which determines whether they will be expressed or not. Gene expression can also be controlled by repressor proteins that attach to silencer regions of the DNA and prevent that region of the DNA code from being expressed. Epigenetic marks may be added or removed from the DNA during programmed stages of development of the plant, and are responsible, for example, for the differences between anthers, petals and normal leaves, despite the fact that they all have the same underlying genetic code. Epigenetic changes may be temporary or may remain through successive cell divisions for the remainder of the cell's life. Some epigenetic changes have been shown to be heritable,[135] while others are reset in the germ cells.

Epigenetic changes in eukaryotic biology serve to regulate the process of cellular differentiation. During morphogenesis, totipotent stem cells become the various pluripotent cell lines of the embryo, which in turn become fully differentiated cells. A single fertilised egg cell, the zygote, gives rise to the many different plant cell types including parenchyma, xylem vessel elements, phloem sieve tubes, guard cells of the epidermis, etc. as it continues to divide. The process results from the epigenetic activation of some genes and inhibition of others.[136]

Unlike animals, many plant cells, particularly those of the parenchyma, do not terminally differentiate, remaining totipotent with the ability to give rise to a new individual plant. Exceptions include highly lignified cells, the sclerenchyma and xylem which are dead at maturity, and the phloem sieve tubes which lack nuclei. While plants use many of the same epigenetic mechanisms as animals, such as chromatin remodelling, an alternative hypothesis is that plants set their gene expression patterns using positional information from the environment and surrounding cells to determine their developmental fate.[137]

Plant evolution[edit]
Main article: Evolutionary history of plants
colour image of a cross section of a fossil stem of Rhynia gwynne-vaughanii, a Devonian vascular plant
Transverse section of a fossil stem of the Devonian vascular plant Rhynia gwynne-vaughani
The chloroplasts of plants have a number of biochemical, structural and genetic similarities to cyanobacteria, (commonly but incorrectly known as "blue-green algae") and are thought to be derived from an ancient endosymbiotic relationship between an ancestral eukaryotic cell and a cyanobacterial resident.[138][139][140][141]

The algae are a polyphyletic group and are placed in various divisions, some more closely related to plants than others. There are many differences between them in features such as cell wall composition, biochemistry, pigmentation, chloroplast structure and nutrient reserves. The algal division Charophyta, sister to the green algal division Chlorophyta, is considered to contain the ancestor of true plants.[142] The Charophyte class Charophyceae and the land plant sub-kingdom Embryophyta together form the monophyletic group or clade Streptophytina.[143]

Nonvascular land plants are embryophytes that lack the vascular tissues xylem and phloem. They include mosses, liverworts and hornworts. Pteridophytic vascular plants with true xylem and phloem that reproduced by spores germinating into free-living gametophytes evolved during the Silurian period and diversified into several lineages during the late Silurian and early Devonian. Representatives of the lycopods have survived to the present day. By the end of the Devonian period, several groups, including the lycopods, sphenophylls and progymnosperms, had independently evolved "megaspory" – their spores were of two distinct sizes, larger megaspores and smaller microspores. Their reduced gametophytes developed from megaspores retained within the spore-producing organs (megasporangia) of the sporophyte, a condition known as endospory. Seeds consist of an endosporic megasporangium surrounded by one or two sheathing layers (integuments). The young sporophyte develops within the seed, which on germination splits to release it. The earliest known seed plants date from the latest Devonian Famennian stage.[144][145] Following the evolution of the seed habit, seed plants diversified, giving rise to a number of now-extinct groups, including seed ferns, as well as the modern gymnosperms and angiosperms.[146] Gymnosperms produce "naked seeds" not fully enclosed in an ovary; modern representatives include conifers, cycads, Ginkgo, and Gnetales. Angiosperms produce seeds enclosed in a structure such as a carpel or an ovary.[147][148] Ongoing research on the molecular phylogenetics of living plants appears to show that the angiosperms are a sister clade to the gymnosperms.[149]

Plant physiology[edit]
Further information: Plant physiology
A Venn diagram of the relationships between five key areas of plant physiology
Five of the key areas of study within plant physiology
Plant physiology encompasses all the internal chemical and physical activities of plants associated with life.[150] Chemicals obtained from the air, soil and water form the basis of all plant metabolism. The energy of sunlight, captured by oxygenic photosynthesis and released by cellular respiration, is the basis of almost all life. Photoautotrophs, including all green plants, algae and cyanobacteria gather energy directly from sunlight by photosynthesis. Heterotrophs including all animals, all fungi, all completely parasitic plants, and non-photosynthetic bacteria take in organic molecules produced by photoautotrophs and respire them or use them in the construction of cells and tissues.[151] Respiration is the oxidation of carbon compounds by breaking them down into simpler structures to release the energy they contain, essentially the opposite of photosynthesis.[152]

Molecules are moved within plants by transport processes that operate at a variety of spatial scales. Subcellular transport of ions, electrons and molecules such as water and enzymes occurs across cell membranes. Minerals and water are transported from roots to other parts of the plant in the transpiration stream. Diffusion, osmosis, and active transport and mass flow are all different ways transport can occur.[153] Examples of elements that plants need to transport are nitrogen, phosphorus, potassium, calcium, magnesium, and sulfur. In vascular plants, these elements are extracted from the soil as soluble ions by the roots and transported throughout the plant in the xylem. Most of the elements required for plant nutrition come from the chemical breakdown of soil minerals.[154] Sucrose produced by photosynthesis is transported from the leaves to other parts of the plant in the phloem and plant hormones are transported by a variety of processes.

Plant hormones[edit]
A diagram of the mechanism of phototropism in oat coleoptiles
1 An oat coleoptile with the sun overhead. Auxin (pink) is evenly distributed in its tip.
2 With the sun at an angle and only shining on one side of the shoot, auxin moves to the opposite side and stimulates cell elongation there.
3 and 4 Extra growth on that side causes the shoot to bend towards the sun.[155]
Further information: Plant hormone and Phytochrome
Plants are not passive, but respond to external signals such as light, touch, and injury by moving or growing towards or away from the stimulus, as appropriate. Tangible evidence of touch sensitivity is the almost instantaneous collapse of leaflets of Mimosa pudica, the insect traps of Venus flytrap and bladderworts, and the pollinia of orchids.[156]

The hypothesis that plant growth and development is coordinated by plant hormones or plant growth regulators first emerged in the late 19th century. Darwin experimented on the movements of plant shoots and roots towards light[157] and gravity, and concluded "It is hardly an exaggeration to say that the tip of the radicle . . acts like the brain of one of the lower animals . . directing the several movements".[158] About the same time, the role of auxins (from the Greek auxein, to grow) in control of plant growth was first outlined by the Dutch scientist Frits Went.[159] The first known auxin, indole-3-acetic acid (IAA), which promotes cell growth, was only isolated from plants about 50 years later.[160] This compound mediates the tropic responses of shoots and roots towards light and gravity.[161] The finding in 1939 that plant callus could be maintained in culture containing IAA, followed by the observation in 1947 that it could be induced to form roots and shoots by controlling the concentration of growth hormones were key steps in the development of plant biotechnology and genetic modification.[162]

File:Venus Fly Trap Eating Compilation Scott's Revenge On The Caterpillars.ogv
Venus's fly trap, Dionaea muscipula, showing the touch-sensitive insect trap in action
Cytokinins are a class of plant hormones named for their control of cell division or cytokinesis. The natural cytokinin zeatin was discovered in corn, Zea mays, and is a derivative of the purine adenine. Zeatin is produced in roots and transported to shoots in the xylem where it promotes cell division, bud development, and the greening of chloroplasts.[163][164] The gibberelins, such as Gibberelic acid are diterpenes synthesised from acetyl CoA via the mevalonate pathway. They are involved in the promotion of germination and dormancy-breaking in seeds, in regulation of plant height by controlling stem elongation and the control of flowering.[165] Abscisic acid (ABA) occurs in all land plants except liverworts, and is synthesised from carotenoids in the chloroplasts and other plastids. It inhibits cell division, promotes seed maturation, and dormancy, and promotes stomatal closure. It was so named because it was originally thought to control abscission.[166] Ethylene is a gaseous hormone that is produced in all higher plant tissues from methionine. It is now known to be the hormone that stimulates or regulates fruit ripening and abscission,[167][168] and it, or the synthetic growth regulator ethephon which is rapidly metabolised to produce ethylene, are used on industrial scale to promote ripening of cotton, pineapples and other climacteric crops.

Another class of phytohormones is the jasmonates, first isolated from the oil of Jasminum grandiflorum[169] which regulates wound responses in plants by unblocking the expression of genes required in the systemic acquired resistance response to pathogen attack.[170]

In addition to being the primary energy source for plants, light functions as a signalling device, providing information to the plant, such as how much sunlight the plant receives each day. This can result in adaptive changes in a process known as photomorphogenesis. Phytochromes are the photoreceptors in a plant that are sensitive to light.[171]

Plant anatomy and morphology[edit]
Colour image of a 19th-century illustration of the morphology of a rice plant
A nineteenth-century illustration showing the morphology of the roots, stems, leaves and flowers of the rice plant Oryza sativa
Plant anatomy is the study of the structure of plant cells and tissues, whereas plant morphology is the study of their external form.[172] All plants are multicellular eukaryotes, their DNA stored in nuclei.[173][174] The characteristic features of plant cells that distinguish them from those of animals and fungi include a primary cell wall composed of the polysaccharides cellulose, hemicellulose and pectin, [175] larger vacuoles than in animal cells and the presence of plastids with unique photosynthetic and biosynthetic functions as in the chloroplasts. Other plastids contain storage products such as starch (amyloplasts) or lipids (elaioplasts). Uniquely, streptophyte cells and those of the green algal order Trentepohliales[176] divide by construction of a phragmoplast as a template for building a cell plate late in cell division.[81]

A diagram of a "typical" eudicot, the most common type of plant (three-fifths of all plant species).[177] No plant actually looks exactly like this though.
A diagram of a "typical" eudicot, the most common type of plant (three-fifths of all plant species).[177] No plant actually looks exactly like this though.
The bodies of vascular plants including clubmosses, ferns and seed plants (gymnosperms and angiosperms) generally have aerial and subterranean subsystems. The shoots consist of stems bearing green photosynthesising leaves and reproductive structures. The underground vascularised roots bear root hairs at their tips and generally lack chlorophyll.[178] Non-vascular plants, the liverworts, hornworts and mosses do not produce ground-penetrating vascular roots and most of the plant participates in photosynthesis.[179] The sporophyte generation is nonphotosynthetic in liverworts but may be able to contribute part of its energy needs by photosynthesis in mosses and hornworts.[180]

The root system and the shoot system are interdependent – the usually nonphotosynthetic root system depends on the shoot system for food, and the usually photosynthetic shoot system depends on water and minerals from the root system.[178] Cells in each system are capable of creating cells of the other and producing adventitious shoots or roots.[181] Stolons and tubers are examples of shoots that can grow roots.[182] Roots that spread out close to the surface, such as those of willows, can produce shoots and ultimately new plants.[183] In the event that one of the systems is lost, the other can often regrow it. In fact it is possible to grow an entire plant from a single leaf, as is the case with Saintpaulia,[184] or even a single cell – which can dedifferentiate into a callus (a mass of unspecialised cells) that can grow into a new plant.[181] In vascular plants, the xylem and phloem are the conductive tissues that transport resources between shoots and roots. Roots are often adapted to store food such as sugars or starch,[178] as in sugar beets and carrots.[183]

Stems mainly provide support to the leaves and reproductive structures, but can store water in succulent plants such as cacti, food as in potato tubers, or reproduce vegetatively as in the stolons of strawberry plants or in the process of layering.[185] Leaves gather sunlight and carry out photosynthesis.[186] Large, flat, flexible, green leaves are called foliage leaves.[187] Gymnosperms, such as conifers, cycads, Ginkgo, and gnetophytes are seed-producing plants with open seeds.[188] Angiosperms are seed-producing plants that produce flowers and have enclosed seeds.[147] Woody plants, such as azaleas and oaks, undergo a secondary growth phase resulting in two additional types of tissues: wood (secondary xylem) and bark (secondary phloem and cork). All gymnosperms and many angiosperms are woody plants.[189] Some plants reproduce sexually, some asexually, and some via both means.[190]

Although reference to major morphological categories such as root, stem, leaf, and trichome are useful, one has to keep in mind that these categories are linked through intermediate forms so that a continuum between the categories results.[191] Furthermore, structures can be seen as processes, that is, process combinations.[46]

Systematic botany[edit]
Further information: Taxonomy (biology)
photograph of a botanist preparing plant specimens for the herbarium
A botanist preparing a plant specimen for mounting in the herbarium
Systematic botany is part of systematic biology, which is concerned with the range and diversity of organisms and their relationships, particularly as determined by their evolutionary history.[192] It involves, or is related to, biological classification, scientific taxonomy and phylogenetics. Biological classification is the method by which botanists group organisms into categories such as genera or species. Biological classification is a form of scientific taxonomy. Modern taxonomy is rooted in the work of Carl Linnaeus, who grouped species according to shared physical characteristics. These groupings have since been revised to align better with the Darwinian principle of common descent – grouping organisms by ancestry rather than superficial characteristics. While scientists do not always agree on how to classify organisms, molecular phylogenetics, which uses DNA sequences as data, has driven many recent revisions along evolutionary lines and is likely to continue to do so. The dominant classification system is called Linnaean taxonomy. It includes ranks and binomial nomenclature. The nomenclature of botanical organisms is codified in the International Code of Nomenclature for algae, fungi, and plants (ICN) and administered by the International Botanical Congress.[193][194]

Kingdom Plantae belongs to Domain Eukarya and is broken down recursively until each species is separately classified. The order is: Kingdom; Phylum (or Division); Class; Order; Family; Genus (plural genera); Species. The scientific name of a plant represents its genus and its species within the genus, resulting in a single worldwide name for each organism.[194] For example, the tiger lily is Lilium columbianum. Lilium is the genus, and columbianum the specific epithet. The combination is the name of the species. When writing the scientific name of an organism, it is proper to capitalise the first letter in the genus and put all of the specific epithet in lowercase. Additionally, the entire term is ordinarily italicised (or underlined when italics are not available).[195][196][197]

The evolutionary relationships and heredity of a group of organisms is called its phylogeny. Phylogenetic studies attempt to discover phylogenies. The basic approach is to use similarities based on shared inheritance to determine relationships.[198] As an example, species of Pereskia are trees or bushes with prominent leaves. They do not obviously resemble a typical leafless cactus such as an Echinocactus. However, both Pereskia and Echinocactus have spines produced from areoles (highly specialised pad-like structures) suggesting that the two genera are indeed related.[199][200]

Two cacti of very different appearance

Pereskia aculeata

Echinocactus grusonii
Although Pereskia is a tree with leaves, it has spines and areoles like a more typical cactus, such as Echinocactus.
Judging relationships based on shared characters requires care, since plants may resemble one another through convergent evolution in which characters have arisen independently. Some euphorbias have leafless, rounded bodies adapted to water conservation similar to those of globular cacti, but characters such as the structure of their flowers make it clear that the two groups are not closely related. The cladistic method takes a systematic approach to characters, distinguishing between those that carry no information about shared evolutionary history – such as those evolved separately in different groups (homoplasies) or those left over from ancestors (plesiomorphies) – and derived characters, which have been passed down from innovations in a shared ancestor (apomorphies). Only derived characters, such as the spine-producing areoles of cacti, provide evidence for descent from a common ancestor. The results of cladistic analyses are expressed as cladograms: tree-like diagrams showing the pattern of evolutionary branching and descent.[201]

From the 1990s onwards, the predominant approach to constructing phylogenies for living plants has been molecular phylogenetics, which uses molecular characters, particularly DNA sequences, rather than morphological characters like the presence or absence of spines and areoles. The difference is that the genetic code itself is used to decide evolutionary relationships, instead of being used indirectly via the characters it gives rise to. Clive Stace describes this as having "direct access to the genetic basis of evolution."[202] As a simple example, prior to the use of genetic evidence, fungi were thought either to be plants or to be more closely related to plants than animals. Genetic evidence suggests that the true evolutionary relationship of multicelled organisms is as shown in the cladogram below – fungi are more closely related to animals than to plants.[203]



plants




fungi



animals




In 1998 the Angiosperm Phylogeny Group published a phylogeny for flowering plants based on an analysis of DNA sequences from most families of flowering plants. As a result of this work, many questions, such as which families represent the earliest branches of angiosperms, have now been answered.[51] Investigating how plant species are related to each other allows botanists to better understand the process of evolution in plants.[204] Despite the study of model plants and increasing use of DNA evidence, there is ongoing work and discussion among taxonomists about how best to classify plants into various taxa.[205] Technological developments such as computers and electron microscopes have greatly increased the level of detail studied and speed at which data can be analysed.[206]

Agricultural biodiversity

Agricultural biodiversity is a sub-set of general biodiversity. It includes all forms of life directly relevant to agriculture: rare seed varieties and animal breeds (farm biodiversity), but also many other organisms such as soil fauna, weeds, pests, predators, and all of the native plants and animals (wild biodiversity) existing on and flowing through the farm. However, most attention in this field is given to crop varieties and to crop wild relatives. Cultivated varieties can be broadly classified into “modern varieties” and “farmer's or traditional varieties”. Modern varieties are the outcome of formal breeding and are often characterized as 'high yielding'. For example, the short straw wheat and rice varieties of the Green Revolution. In contrast, farmer's varieties (also known as landraces) are the product of (breeding and) selection carried out by farmers. Together, these varieties represent high levels of genetic diversity and are therefore the focus of most crop genetic resources conservation efforts. Agricultural biodiversity will also be absolutely essential to cope with the predicted impacts of climate change, not simply as a source of traits but as the underpinnings of more resilient farm ecosystems.[1] Agricultural biodiversity is the basis of our agricultural food chain, developed and safeguarded by farmers, livestock breeders, forest workers, fishermen and indigenous peoples throughout the world. The use of agricultural biodiversity (as opposed to non diverse production methods) can contribute to food security and livelihood security.

Contents  [hide]
1 Scope
2 Genetic erosion in agricultural and livestock biodiversity
3 Genetic vulnerability
4 Change in agricultural biodiversity in human diets
5 Human dependency
6 Comparisons of Cropping Systems
7 Agroecosystems vs natural ecosystems
8 International negotiations
9 See also
10 Notes and references
11 Video
12 External links
Scope[edit]
Although the term agricultural biodiversity is relatively new - it has come into wide use in recent years as evidenced by bibliographic references - the concept itself is quite old. It is the result of the careful selection and inventive developments of farmers, herders and fishers over millennia. Agricultural biodiversity is a vital sub-set of biodiversity. It is a use of life, i.e. ancillary biotechnologies, by Mankind whose food and livelihood security depend on the sustained management of those diverse biological resources that are important for food and agriculture.[2] As for everything, agricultural biodiversity can be used, not used, misused and even abused. Agricultural biodiversity includes:

Domesticated crop and 'wild' plants (called: crop wild relatives), including woody perennials (see: forest genetic resources) and aquatic plants (used for food and other natural resources based products), domestic and wild animals (used for food, fibre, milk, hides, furs, power, organic fertilizer), fish and other aquatic animals, within field, forest, rangeland and aquatic ecosystems
Domesticated livestock species and their wild relatives
Non-harvested species within production agroecosystems that support food provision, including soil micro-biota, pollinators and so on
Non-harvested species in the wider environment that support food production agroecosystems (agricultural, pastoral, forest and aquatic ecosystems)
However, agricultural biodiversity, sometimes called Agrobiodiversity, "encompasses the variety and variability of animals, plants and micro-organisms which are necessary to sustain key functions of the agroecosystem, its structure and processes for, and in support of, food production and food security".[3] It further "comprises genetic, population, species, community, ecosystem, and landscape components and human interactions with all these."[4]

Aquatic diversity is also an important component of agricultural biodiversity. The conservation and sustainable use of local aquatic ecosystems, ponds, rivers, coastal commons by artisanal fisherfolk and smallholder farmers is important to the survival of both humans and the environment. Since aquatic organisms, including fish, provide much of our food supply as well as underpinning the income of coastal peoples, it is critical that fisherfolk and smallholder farmers have genetic reserves and sustainable ecosystems to draw upon as aquaculture and marine fisheries management continue to evolve.

Genetic erosion in agricultural and livestock biodiversity[edit]
Genetic erosion in agricultural and livestock biodiversity is the loss of genetic diversity, including the loss of individual genes, and the loss of particular combinations of genes (or gene complexes) such as those manifested in locally adapted landraces or breeds. The term genetic erosion is sometimes used in a narrow sense, such as for the loss of alleles or genes, as well as more broadly, referring to the loss of varieties or even species. The major driving forces behind genetic erosion in crops are: variety replacement, land clearing, overexploitation of species, population pressure, environmental degradation, overgrazing, policy and changing agricultural systems.[5]

The main factor, however, is the replacement of local varieties by high yielding or exotic varieties or species. A large number of varieties can also often be dramatically reduced when commercial varieties (including GMOs) are introduced into traditional farming systems. Many researchers believe that the main problem related to agro-ecosystem management is the general tendency towards genetic and ecological uniformity imposed by the development of modern agriculture.[6][7] Pressures for that ecological uniformity on farmers and breeders is caused by the food industry demand for more and more raw materials consistency.

In the case of Animal Genetic Resources for Food and Agriculture, major causes of genetic erosion are reported to include indiscriminate cross-breeding, increased use of exotic breeds, weak policies and institutions in animal genetic resources management, neglect of certain breeds because of a lack of profitability or competitiveness, the intensification of production systems, the effects of diseases and disease management, loss of pastures or other elements of the production environment, and poor control of inbreeding.[8]

Genetic vulnerability[edit]
In plant breeding, a population of plants is considered genetically vulnerable if there is little genetic diversity within the population, and this lack of diversity makes the population as a whole particularly vulnerable to disease, pests, or other factors. The problem of genetic vulnerability often arises with modern crop varieties, which are uniform by design.[9][10]

An example of the consequences of genetic vulnerability occurred in 1970 when corn blight struck the US corn belt, destroying 15% of the harvest. A particular plant cell characteristic known as Texas male sterile cytoplasm conferred vulnerability to the blight - a subsequent study by the National Academy of Sciences found that 90% of American maize plants carried this trait.[11]

Change in agricultural biodiversity in human diets[edit]
Since 1961, human diets across the world have become more diverse in the consumption of major commodity staple crops, with a corollary decline in consumption of local or regionally important crops, and thus have become more homogeneous globally.[12] The differences between the foods eaten in different countries were reduced by 68% between 1961 and 2009. The modern "global standard"[12] diet contains an increasingly large percentage of a relatively small number of major staple commodity crops, which have increased substantially in the share of the total food energy (calories), protein, fat, and food weight that they provide to the world's human population, including wheat, rice, sugar, maize, soybean (by +284%[13]), palm oil (by +173%[13]), and sunflower (by +246%[13]). Whereas nations used to consume greater proportions of locally or regionally important crops, wheat has become a staple in over 97% of countries, with the other global staples showing similar dominance worldwide. Other crops have declined sharply over the same period, including rye, yam, sweet potato (by -45%[13]), cassava (by -38%[13]), coconut, sorghum (by -52%[13]) and millets (by -45%[13]).[12][13][14]

Human dependency[edit]
Agricultural biodiversity is not only the result of human activity but human life is dependent on it not just for the immediate provision of food and other natural resources based goods, but for the maintenance of areas of land and waters that will sustain production and maintain agroecosystems and the wider biological and environmental services (biosphere).

Agricultural Biodiversity provides:

Sustainable production of food and other agricultural products emphasising both strengthening sustainability in production systems at all levels of intensity and improving the conservation, sustainable use and enhancement of the diversity of all genetic resources for food and agriculture, especially plant and animal genetic resources, in all types of production systems [15]
Biological or life support to production emphasising conservation, sustainable use and enhancement of the biological resources that support sustainable production systems, particularly soil biota, pollinators and predators
Ecological and social services provided by agro-ecosystems such as landscape and wildlife protection, soil protection and health (fertility, structure and function), water cycle and water quality, air quality, CO2 sequestration, etc.
Research supporting these findings addresses multifunctional agriculture in Europe, home gardens from around the world,[16] smallholder farms in the tropics,[17] among others.

Comparisons of Cropping Systems[edit]
The general trend noticed by the analysis of biodiversity present in different cropping systems (e.g., industrial agriculture and organic farming) was that a greater the diversity of crops (temporally and spacially) resulted in a greater overall biodiversity of the agroecosystem, though this is not always the case. A meta-analysis of studies comparing biodiversity noted that, when compared to organic cropping systems, conventional systems had significantly lower species richness and abundance (30% greater richness and 50% greater abundance in organic systems, on average), though 16% of studies did find a greater level of species richness in conventional systems.[18] Another study found that cropping systems that required heavy use of chemical amendments (e.g., the widespread broadcasting of pesticides and glyphosate, a practice ubiquitously found throughout the United States and Canada) had significantly greater levels of pollination deficits, whereas organic fields of the same crop (Canola) witnessed no pollination deficits.[19] Other cropping systems like permaculture have undergone little study to determine relative levels of biodiversity compared to other cropping systems, but because they continue to reinforce the goals of increasing overall crop biodiversity, it can be extrapolated that an even greater level of biodiversity would be observed.

Agroecosystems vs natural ecosystems[edit]
Agricultural biodiversity has spatial, temporal and scale dimensions especially at agroecosystem levels. These agroecosystems - ecosystems that are used for agriculture - are determined by three sets of factors: the genetic resources (biodiversity), the physical environment and the human management practices. There are not many ecosystems in the world that are "natural" in the sense of having escaped human influence. Most ecosystems have been to some extent modified or cultivated by human activity for the production of food and income and for livelihood security. However, most agricultural areas can be returned to their natural landscape after subsequent generations.

Agroecology

Agroecology is the study of ecological processes applied to agricultural production systems. The prefix agro- refers to agriculture. Bringing ecological principles to bear in agroecosystems can suggest novel management approaches that would not otherwise be considered. The term is often used imprecisely and may refer to "a science, a movement, [or] a practice".[1] Agroecologists study a variety of agroecosystems, and the field of agroecology is not associated with any one particular method of farming, whether it be organic, integrated, or conventional; intensive or extensive, although it has much more in common with some of the before mentioned farming systems.[2]

Contents  [hide]
1 Ecological strategy
2 Approaches
2.1 Agro-population ecology
2.2 Indigenous agroecology
2.3 Inclusive agroecology
3 Applications
3.1 Views on organic and non-organic milk production
3.2 Views on no-till farming
4 History
4.1 Pre-WWII
4.2 Post-WWII
4.3 Fusion with ecology
5 Publications
6 By region
6.1 Latin America
6.2 Africa
6.3 Madagascar
7 See also
8 References
9 Further reading
10 External links
10.1 Topic
10.2 Courses
Ecological strategy[edit]
Agroecologists do not unanimously oppose technology or inputs in agriculture but instead assess how, when, and if technology can be used in conjunction with natural, social and human assets.[3] Agroecology proposes a context- or site-specific manner of studying agroecosystems, and as such, it recognizes that there is no universal formula or recipe for the success and maximum well-being of an agroecosystem. Thus, agroecology is not defined by certain management practices, such as the use of natural enemies in place of insecticides, or polyculture in place of monoculture.


Instead, agroecologists may study questions related to the four system properties of agroecosystems: productivity, stability, sustainability and equitability.[4] As opposed to disciplines that are concerned with only one or some of these properties, agroecologists see all four properties as interconnected and integral to the success of an agroecosystem. Recognizing that these properties are found on varying spatial scales, agroecologists do not limit themselves to the study of agroecosystems at any one scale: gene-organism-population-community-ecosystem-landscape-biome, field-farm-community-region-state-country-continent-global.

Agroecologists study these four properties through an interdisciplinary lens, using natural sciences to understand elements of agroecosystems such as soil properties and plant-insect interactions, as well as using social sciences to understand the effects of farming practices on rural communities, economic constraints to developing new production methods, or cultural factors determining farming practices.

Approaches[edit]
Agroecologists do not always agree about what agroecology is or should be in the long-term. Different definitions of the term agroecology can be distinguished largely by the specificity with which one defines the term "ecology", as well as the term's potential political connotations. Definitions of agroecology, therefore, may be first grouped according to the specific contexts within which they situate agriculture. Agroecology is defined by the OECD as "the study of the relation of agricultural crops and environment."[5] This definition refers to the "-ecology" part of "agroecology" narrowly as the natural environment. Following this definition, an agroecologist would study agriculture's various relationships with soil health, water quality, air quality, meso- and micro-fauna, surrounding flora, environmental toxins, and other environmental contexts.

A more common definition of the word can be taken from Dalgaard et al., who refer to agroecology as the study of the interactions between plants, animals, humans and the environment within agricultural systems. Consequently, agroecology is inherently multidisciplinary, including factors from agronomy, ecology, sociology, economics and related disciplines.[6] In this case, the "-ecology" portion of "agroecology is defined broadly to include social, cultural, and economic contexts as well. Francis et al. also expand the definition in the same way, but put more emphasis on the notion of food systems.[7]

Agroecology is also defined differently according to geographic location. In the global south, the term often carries overtly political connotations. Such political definitions of the term usually ascribe to it the goals of social and economic justice; special attention, in this case, is often paid to the traditional farming knowledge of indigenous populations.[8] North American and European uses of the term sometimes avoid the inclusion of such overtly political goals. In these cases, agroecology is seen more strictly as a scientific discipline with less specific social goals.

Agro-population ecology[edit]
This approach is derived from the science of ecology primarily based on population ecology, which over the past three decades has been displacing the ecosystems biology of Odum. Buttel explains the main difference between the two categories, saying that "the application of population ecology to agroecology involves the primacy not only of analyzing agroecosystems from the perspective of the population dynamics of their constituent species, and their relationships to climate and biogeochemistry, but also there is a major emphasis placed on the role of genetics."[9]

Indigenous agroecology[edit]
This concept was proposed by political ecologist Josep Garí to recognise and uphold the integrated agro-ecological practices of many indigenous peoples, who simultaneously and sustainably safeguard, manage and use ecosystems for agricultural, food, biodiversity and cultural purposes at the same time.[10] Indigenous agroecologies are not systems and practices halted in time, but keep co-evolving with new knowledge and resources, such as that provided by development projects, research initiatives and agro-biodiversity exchanges. In fact, the first agro-ecologists were indigenous peoples that advocated development policies and programmes to support their systems, rather than replacing them.[11]

Inclusive agroecology[edit]
Rather than viewing agroecology as a subset of agriculture, Wojtkowski[12][13] takes a more encompassing perspective. In this, natural ecology and agroecology are the major headings under ecology. Natural ecology is the study of organisms as they interact with and within natural environments. Correspondingly, agroecology is the basis for the land-use sciences. Here humans are the primary governing force for organisms within planned and managed, mostly terrestrial, environments.

As key headings, natural ecology and agroecology provide the theoretical base for their respective sciences. These theoretical bases overlap but differ in a major way. Economics has no role in the functioning of natural ecosystems whereas economics sets direction and purpose in agroecology.

Under agroecology are the three land-use sciences, agriculture, forestry, and agroforestry. Although these use their plant components in different ways, they share the same theoretical core.

Beyond this, the land-use sciences further subdivide. The subheadings include agronomy, organic farming, traditional agriculture, permaculture, and silviculture. Within this system of subdivisions, agroecology is philosophically neutral. The importance lies in providing a theoretical base hitherto lacking in the land-use sciences. This allows progress in biocomplex agroecosystems including the multi-species plantations of forestry and agroforestry.

Applications[edit]
To arrive at a point of view about a particular way of farming, an agroecologist would first seek to understand the contexts in which the farm(s) is(are) involved. Each farm may be inserted in a unique combination of factors or contexts. Each farmer may have their own premises about the meanings of an agricultural endeavor, and these meanings might be different from those of agroecologists. Generally, farmers seek a configuration that is viable in multiple contexts, such as family, financial, technical, political, logistical, market, environmental, spiritual. Agroecologists want to understand the behavior of those who seek livelihoods from plant and animal increase, acknowledging the organization and planning that is required to run a farm.

Views on organic and non-organic milk production[edit]
Because organic agriculture proclaims to sustain the health of soils, ecosystems, and people,[14] it has much in common with Agroecology;[citation needed] this does not mean that Agroecology is synonymous with organic agriculture, nor that Agroecology views organic farming as the 'right' way of farming.[citation needed] Also, it is important to point out that there are large differences in organic standards among countries and certifying agencies.

Three of the main areas that agroecologists would look at in farms, would be: the environmental impacts, animal welfare issues, and the social aspects.

Environmental impacts caused by organic and non-organic milk production can vary significantly. For both cases, there are positive and negative environmental consequences.

Compared to conventional milk production, organic milk production tends to have lower eutrophication potential per ton of milk or per hectare of farmland, because it potentially reduces leaching of nitrates (NO3−) and phosphates (PO4−) due to lower fertilizer application rates. Because organic milk production reduces pesticides utilization, it increases land use per ton of milk due to decreased crop yields per hectare. Mainly due to the lower level of concentrates given to cows in organic herds, organic dairy farms generally produce less milk per cow than conventional dairy farms. Because of the increased use of roughage and the, on-average, lower milk production level per cow, some research has connected organic milk production with increases in the emission of methane.[15]

Animal welfare issues vary among dairy farms and are not necessarily related to the way of producing milk (organically or conventionally).

A key component of animal welfare is freedom to perform their innate (natural) behavior, and this is stated in one of the basic principles of organic agriculture. Also, there are other aspects of animal welfare to be considered – such as freedom from hunger, thirst, discomfort, injury, fear, distress, disease and pain. Because organic standards require loose housing systems, adequate bedding, restrictions on the area of slatted floors, a minimum forage proportion in the ruminant diets, and tend to limit stocking densities both on pasture and in housing for dairy cows, they potentially promote good foot and hoof health. Some studies show lower incidence of placenta retention, milk fever, abomasums displacement and other diseases in organic than in conventional dairy herds.[16] However, the level of infections by parasites in organically managed herds is generally higher than in conventional herds.[17]

Social aspects of dairy enterprises include life quality of farmers, of farm labor, of rural and urban communities, and also includes public health.

Both organic and non-organic farms can have good and bad implications for the life quality of all the different people involved in that food chain. Issues like labor conditions, labor hours and labor rights, for instance, do not depend on the organic/non-organic characteristic of the farm; they can be more related to the socio-economical and cultural situations in which the farm is inserted, instead.

As for the public health or food safety concern, organic foods are intended to be healthy, free of contaminations and free from agents that could cause human diseases. Organic milk is meant to have no chemical residues to consumers, and the restrictions on the use of antibiotics and chemicals in organic food production has the purpose to accomplish this goal. Although dairy cows in both organic and conventional farming practices can be exposed to pathogens, it has been shown that, because antibiotics are not permitted as a preventative measure in organic practices, there are far fewer antibiotic resistant pathogens on organic farms. This dramatically increases the efficacy of antibiotics when/if they are necessary.

In an organic dairy farm, an agroecologist could evaluate the following:

Can the farm minimize environmental impacts and increase its level of sustainability, for instance by efficiently increasing the productivity of the animals to minimize waste of feed and of land use?
Are there ways to improve the health status of the herd (in the case of organics, by using biological controls, for instance)?
Does this way of farming sustain good quality of life for the farmers, their families, rural labor and communities involved?
Views on no-till farming[edit]
No-tillage is one of the components of conservation agriculture practices and is considered more environmental friendly than complete tillage.[18][19] There is a general consensus that no-till can increase soils capacity of acting as a carbon sink, especially when combined with cover crops.[18][20]

No-till can contribute to higher soil organic matter and organic carbon content in soils,[21][22] though reports of no-effects of no-tillage in organic matter and organic carbon soil contents also exist, depending on environmental and crop conditions.[23] In addition, no-till can indirectly reduce CO2 emissions by decreasing the use of fossil fuels.[21][24]

Most crops can benefit from the practice of no-till, but not all crops are suitable for complete no-till agriculture.[25][26] Crops that do not perform well when competing with other plants that grow in untilled soil in their early stages can be best grown by using other conservation tillage practices, like a combination of strip-till with no-till areas.[26] Also, crops which harvestable portion grows underground can have better results with strip-tillage,[citation needed] mainly in soils which are hard for plant roots to penetrate into deeper layers to access water and nutrients.

The benefits provided by no-tillage to predators may lead to larger predator populations,[27] which is a good way to control pests (biological control), but also can facilitate predation of the crop itself. In corn crops, for instance, predation by caterpillars can be higher in no-till than in conventional tillage fields.[28]

In places with rigorous winter, untilled soil can take longer to warm and dry in spring, which may delay planting to less ideal dates.[29][30] Another factor to be considered is that organic residue from the prior year's crops lying on the surface of untilled fields can provide a favorable environment to pathogens, helping to increase the risk of transmitting diseases to the future crop. And because no-till farming provides good environment for pathogens, insects and weeds, it can lead farmers to a more intensive use of chemicals for pest control.[citation needed] Other disadvantages of no-till include underground rot, low soil temperatures and high moisture.[citation needed]

Based on the balance of these factors, and because each farm has different problems, agroecologists will not attest that only no-till or complete tillage is the right way of farming.[citation needed] Yet, these are not the only possible choices regarding soil preparation, since there are intermediate practices such as strip-till, mulch-till and ridge-till, all of them – just as no-till – categorized as conservation tillage. Agroecologists, then, will evaluate the need of different practices for the contexts in which each farm is inserted.

In a no-till system, an agroecologist could ask the following:

Can the farm minimize environmental impacts and increase its level of sustainability; for instance by efficiently increasing the productivity of the crops to minimize land use?
Does this way of farming sustain good quality of life for the farmers, their families, rural labor and rural communities involved?
History[edit]
Pre-WWII[edit]
The notions and ideas relating to crop ecology have been around since at least 1911 when F.H. King released Farmers of Forty Centuries. King was one of the pioneers as a proponent of more quantitative methods for characterization of water relations and physical properties of soils.[7] In the late 1920s the attempt to merge agronomy and ecology was born with the development of the field of crop ecology. Crop ecology's main concern was where crops would be best grown.[31] Actually, it was only in 1928 that agronomy and ecology were formally linked by Klages.[7][32]

The first mention of the term agroecology was in 1928, with the publication of the term by Bensin in 1928.[33] The book of Tischler (1965), was probably the first to be actually titled 'agroecology'.[34] He analysed the different components (plants, animals, soils and climate) and their interactions within an agroecosystem as well as the impact of human agricultural management on these components. Other books dealing with agroecology, but without using the term explicitly were published by the German zoologist Friederichs (1930) with his book on agricultural zoology and related ecological/environmental factors for plant protection,[35] and by American crop physiologist Hansen in 1939[36] when both used the word as a synonym for the application of ecology within agriculture.[6][clarification needed]

Post-WWII[edit]
Gliessman mentions that post-WWII, groups of scientists with ecologists gave more focus to experiments in the natural environment, while agronomists dedicated their attention to the cultivated systems in agriculture.[31] According to Gliessman,[31] the two groups kept their research and interest apart until books and articles using the concept of agroecosystems and the word agroecology started to appear in 1970.[33] Dalgaard[6] explains the different points of view in ecology schools, and the fundamental differences, which set the basis for the development of agroecology. The early ecology school of Henry Gleason investigated plant populations focusing in the hierarchical levels of the organism under study.

Friederich Clement's ecology school, however included the organism in question as well as the higher hierarchical levels in its investigations, a "landscape perspective". However, the ecological schools where the roots of agroecology lie are even broader in nature. The ecology school of Tansley, whose view included both the biotic organism and their environment, is the one from which the concept of agroecosystems emerged in 1974 with Harper.[6][37]

In the 1960s and 1970s the increasing awareness of how humans manage the landscape and its consequences set the stage for the necessary cross between agronomy and ecology. Even though, in many ways the environmental movement in the US was a product of the times, the Green Decade,[clarification needed] spread an environmental awareness of the unintended consequences of changing ecological processes. Works such as Silent Spring, and The Limits to Growth, and changes in legislation such as the Clean Air Act, Clean Water Act, and the National Environmental Policy Act caused the public to be aware of societal growth patterns, agricultural production, and the overall capacity of the system.[6]

Fusion with ecology[edit]
After the 1970s, when agronomists saw the value of ecology and ecologists began to use the agricultural systems as study plots, studies in agroecology grew more rapidly.[31] Gliessman describes that the innovative work of Prof. Efraim Hernandez X., who developed research based on indigenous systems of knowledge in Mexico, led to education programs in agroecology.[38] In 1977 Prof. Efraim Hernandez X. explained that modern agricultural systems had lost their ecological foundation when socio-economic factors became the only driving force in the food system.[7] The acknowledgement that the socio-economic interactions are indeed one of the fundamental components of any agroecosystems came to light in 1982, with the article Agroecologia del Tropico Americano by Montaldo. The author argues that the socio-economic context cannot be separated from the agricultural systems when designing agricultural practices.[7]

In 1995 Edens et al. in Sustainable Agriculture and Integrated Farming Systems solidified this idea proving his point by devoting special sections to economics of the systems, ecological impacts, and ethics and values in agriculture.[7] Actually, 1985 ended up being a fertile and creative year for the new discipline. For instance in the same year, Miguel Altieri integrated how consolidation of the farms, and cropping systems impact pest populations. In addition, Gliessman highlighted that socio-economic, technological, and ecological components give rise to producer choices of food production systems.[7] These pioneering agroecologists have helped to frame the foundation of what we today consider the interdisciplinary field of agroecology and have led to advances in a number of farming systems. In Asian rice, for example, crop diversification by growing flowering crops in strips beside rice fields has recently been demonstrated to reduce pests so effectively (by the flower nectar attracting and supporting parasitoids and predators) that insecticide spraying is reduced by 70%, yields increase by 5%, together resulting in an economic advantage of 7.5% (Gurr et al., 2016).

x

Agriculture is the cultivation and breeding of animals, plants and fungi for food, fiber, biofuel, medicinal plants and other products used to sustain and enhance human life.[1] Agriculture was the key development in the rise of sedentary human civilization, whereby farming of domesticated species created food surpluses that nurtured the development of civilization. The study of agriculture is known as agricultural science. The history of agriculture dates back thousands of years, and its development has been driven and defined by greatly different climates, cultures, and technologies. Industrial agriculture based on large-scale monoculture farming has become the dominant agricultural method.

Modern agronomy, plant breeding, agrochemicals such as pesticides and fertilizers, and technological developments have in many cases sharply increased yields from cultivation, but at the same time have caused widespread ecological damage and negative human health effects. Selective breeding and modern practices in animal husbandry have similarly increased the output of meat, but have raised concerns about animal welfare, environmental damage (such as massive drainage of resources such as water and feed fed to the animals, global warming, rainforest destruction, leftover waste products that are littered), and the health effects of the antibiotics, growth hormones, artificial additives and other chemicals commonly used in industrial meat production. Genetically modified organisms are an increasing component of agriculture, although they are banned in several countries. Agricultural food production and water management are increasingly becoming global issues that are fostering debate on a number of fronts. Significant degradation of land and water resources, including the depletion of aquifers, has been observed in recent decades, and the effects of global warming on agriculture and of agriculture on global warming are still not fully understood. However, entomophagy would solve most of the former problems, and may start to gain popularity among society in the West.[2]

The major agricultural products can be broadly grouped into foods, fibers, fuels, and raw materials. Specific foods include cereals (grains), vegetables, fruits, oils, meats and spices. Fibers include cotton, wool, hemp, silk and flax. Raw materials include lumber and bamboo. Other useful materials are also produced by plants, such as resins, dyes, drugs, perfumes, biofuels and ornamental products such as cut flowers and nursery plants. Over one third of the world's workers are employed in agriculture, second only to the service sector, although the percentages of agricultural workers in developed countries has decreased significantly over the past several centuries.

Contents  [hide]
1 Etymology and terminology
2 History
3 Agriculture and civilization
4 Types of agriculture
5 Contemporary agriculture
6 Workforce
6.1 Safety
7 Agricultural production systems
7.1 Crop cultivation systems
7.1.1 Crop statistics
7.2 Livestock production systems
8 Production practices
9 Crop alteration and biotechnology
9.1 Genetic engineering
10 Environmental impact
10.1 Livestock issues
10.2 Land and water issues
10.3 Pesticides
10.4 Climate change
10.5 Sustainability
11 Agricultural economics
12 Agricultural science
13 List of countries by agricultural output
14 Energy and agriculture
14.1 Mitigation of effects of petroleum shortages
15 Policy
16 See also
17 References
18 Further reading
19 External links
Etymology and terminology[edit]
The word agriculture is a late Middle English adaptation of Latin agricultūra, from ager, "field", and cultūra, "cultivation" or "growing".[3] Agriculture usually refers to human activities, although it is also observed in certain species of ant, termite and ambrosia beetle.[4] To practice agriculture means to use natural resources to "produce commodities which maintain life, including food, fiber, forest products, horticultural crops, and their related services."[5] This definition includes arable farming or agronomy, and horticulture, all terms for the growing of plants, animal husbandry and forestry.[5] A distinction is sometimes made between forestry and agriculture, based on the former's longer management rotations, extensive versus intensive management practices and development mainly by nature, rather than by man. Even then, it is acknowledged that there is a large amount of knowledge transfer and overlap between silviculture (the management of forests) and agriculture.[6] In traditional farming, the two are often combined even on small landholdings, leading to the term agroforestry.[7]

History[edit]
Main article: History of agriculture

A Sumerian harvester's sickle made from baked clay (c. 3000 BC)
Agriculture began independently in different parts of the globe, and included a diverse range of taxa. At least 11 separate regions of the Old and New World were involved as independent centers of origin.[8] Wild grains were collected and eaten from at least 105,000 years ago.[9] Pigs were domesticated in Mesopotamia around 15,000 years ago.[10] Rice was domesticated in China between 13,500 and 8,200 years ago, followed by mung, soy and azuki beans. Sheep were domesticated in Mesopotamia between 13,000 and 11,000 years ago.[11] From around 11,500 years ago, the eight Neolithic founder crops, emmer and einkorn wheat, hulled barley, peas, lentils, bitter vetch, chick peas and flax were cultivated in the Levant. Cattle were domesticated from the wild aurochs in the areas of modern Turkey and Pakistan some 10,500 years ago.[12] In the Andes of South America, the potato was domesticated between 10,000 and 7,000 years ago, along with beans, coca, llamas, alpacas, and guinea pigs. Sugarcane and some root vegetables were domesticated in New Guinea around 9,000 years ago. Sorghum was domesticated in the Sahel region of Africa by 7,000 years ago. Cotton was domesticated in Peru by 5,600 years ago,[13] and was independently domesticated in Eurasia at an unknown time. In Mesoamerica, wild teosinte was domesticated to maize by 6,000 years ago.[14]

In the Middle Ages, both in the Islamic world and in Europe, agriculture was transformed with improved techniques and the diffusion of crop plants, including the introduction of sugar, rice, cotton and fruit trees such as the orange to Europe by way of Al-Andalus.[15][16] After 1492, the Columbian exchange brought New World crops such as maize, potatoes, sweet potatoes and manioc to Europe, and Old World crops such as wheat, barley, rice and turnips, and livestock including horses, cattle, sheep and goats to the Americas.[17] Irrigation, crop rotation, and fertilizers were introduced soon after the Neolithic Revolution and developed much further in the past 200 years, starting with the British Agricultural Revolution. Since 1900, agriculture in the developed nations, and to a lesser extent in the developing world, has seen large rises in productivity as human labor has been replaced by mechanization, and assisted by synthetic fertilizers, pesticides, and selective breeding. The Haber-Bosch method allowed the synthesis of ammonium nitrate fertilizer on an industrial scale, greatly increasing crop yields.[18][19] Modern agriculture has raised political issues including water pollution, biofuels, genetically modified organisms, tariffs and farm subsidies, leading to alternative approaches such as the organic movement[20][21] and regenerative agriculture.

Agriculture and civilization[edit]
Further information: Plants in culture
Civilization was the product of the Agricultural Neolithic Revolution; as H. G. Wells put it, "civilization was the agricultural surplus."[22] In the course of history, civilization coincided in space with fertile areas such as The Fertile Crescent, and states formed mainly in circumscribed agricultural lands. The Great Wall of China and the Roman empire's limes (borders) demarcated the same northern frontier of cereal agriculture. This cereal belt fed the civilizations formed in the Axial Age and connected by the Silk Road.[citation needed]

Ancient Egyptians, whose agriculture depended exclusively on the Nile, deified the river, worshiped, and exalted it in a great hymn.[23] The Nile began to be deified in Egypt because it played such a crucial role in the formation of civilization within the area. This began when early settlers flocked towards the river bank of the Nile around 6000 BCE, settlement which slowly progressed into Egypt, and made it the first recognizable nation state around 3150 BCE. Egypt was able to flourish as a nation state due to the many benefits and resources the Nile provided.[24] The Chinese imperial court issued numerous edicts, stating: "Agriculture is the foundation of this Empire."[25] Egyptian, Mesopotamian, Chinese, and Inca Emperors themselves plowed ceremonial fields in order to show personal example to everyone.[26]

Ancient strategists, Chinese Guan Zhong[27] and Shang Yang[28] and Indian Kautilya,[29] drew doctrines linking agriculture with military power. Agriculture defined the limits on how large and for how long an army could be mobilized. Shang Yang called agriculture and war the One.[30] In the vast human pantheon of agricultural deities[31] there are several deities who combined the functions of agriculture and war.[32]

As the Neolithic Agricultural Revolution produced civilization, the modern Agricultural Revolution, begun in Britain (British Agricultural Revolution), made possible the industrial civilization. The first precondition for industry was greater yields by less manpower, resulting in greater percentage of manpower available for non-agricultural sectors.[33]

Types of agriculture[edit]

Reindeer herds form the basis of pastoral agriculture for several Arctic and Subarctic peoples.
Pastoralism involves managing domesticated animals. In nomadic pastoralism, herds of livestock are moved from place to place in search of pasture, fodder, and water. This type of farming is practised in arid and semi-arid regions of Sahara, Central Asia and some parts of India.[34]

In shifting cultivation, a small area of a forest is cleared by cutting down all the trees and the area is burned. The land is then used for growing crops for several years. When the soil becomes less fertile, the area is then abandoned. Another patch of land is selected and the process is repeated. This type of farming is practiced mainly in areas with abundant rainfall where the forest regenerates quickly. This practice is used in Northeast India, Southeast Asia, and the Amazon Basin.[35]

Subsistence farming is practiced to satisfy family or local needs alone, with little left over for transport elsewhere. It is intensively practiced in Monsoon Asia and South-East Asia.[36]

In intensive farming, the crops are cultivated for commercial purpose i.e., for selling. The main motive of the farmer is to make profit, with a low fallow ratio and a high use of inputs. This type of farming is mainly practiced in highly developed countries.[37][38]

Contemporary agriculture[edit]

Satellite image of farming in Minnesota
In the past century, agriculture has been characterized by increased productivity, the substitution of synthetic fertilizers and pesticides for labor, water pollution, and farm subsidies. In recent years there has been a backlash against the external environmental effects of conventional agriculture, resulting in the organic, regenerative, and sustainable agriculture movements.[20][39] One of the major forces behind this movement has been the European Union, which first certified organic food in 1991 and began reform of its Common Agricultural Policy (CAP) in 2005 to phase out commodity-linked farm subsidies,[40] also known as decoupling. The growth of organic farming has renewed research in alternative technologies such as integrated pest management and selective breeding. Recent mainstream technological developments include genetically modified food.

In 2007, higher incentives for farmers to grow non-food biofuel crops[41] combined with other factors, such as over development of former farm lands, rising transportation costs, climate change, growing consumer demand in China and India, and population growth,[42] caused food shortages in Asia, the Middle East, Africa, and Mexico, as well as rising food prices around the globe.[43][44] As of December 2007, 37 countries faced food crises, and 20 had imposed some sort of food-price controls. Some of these shortages resulted in food riots and even deadly stampedes.[45][46][47] The International Fund for Agricultural Development posits that an increase in smallholder agriculture may be part of the solution to concerns about food prices and overall food security. They in part base this on the experience of Vietnam, which went from a food importer to large food exporter and saw a significant drop in poverty, due mainly to the development of smallholder agriculture in the country.[48]

Disease and land degradation are two of the major concerns in agriculture today. For example, an epidemic of stem rust on wheat caused by the Ug99 lineage is currently spreading across Africa and into Asia and is causing major concerns due to crop losses of 70% or more under some conditions.[49] Approximately 40% of the world's agricultural land is seriously degraded.[50] In Africa, if current trends of soil degradation continue, the continent might be able to feed just 25% of its population by 2025, according to United Nations University's Ghana-based Institute for Natural Resources in Africa.[51]

Agrarian structure is a long-term structure in the Braudelian understanding of the concept. On a larger scale the agrarian structure is more dependent on the regional, social, cultural and historical factors than on the state’s undertaken activities. Like in Poland, where despite running an intense agrarian policy for many years, the agrarian structure in 2002 has much in common with that found in 1921 soon after the partitions period.[52]

In 2009, the agricultural output of China was the largest in the world, followed by the European Union, India and the United States, according to the International Monetary Fund (see below). Economists measure the total factor productivity of agriculture and by this measure agriculture in the United States is roughly 1.7 times more productive than it was in 1948.[53]

Workforce[edit]
As of 2011, the International Labour Organization states that approximately one billion people, or over 1/3 of the available work force, are employed in the global agricultural sector. Agriculture constitutes approximately 70% of the global employment of children, and in many countries employs the largest percentage of women of any industry.[54] The service sector only overtook the agricultural sector as the largest global employer in 2007. Between 1997 and 2007, the percentage of people employed in agriculture fell by over four percentage points, a trend that is expected to continue.[55] The number of people employed in agriculture varies widely on a per-country basis, ranging from less than 2% in countries like the US and Canada to over 80% in many African nations.[56] In developed countries, these figures are significantly lower than in previous centuries. During the 16th century in Europe, for example, between 55 and 75 percent of the population was engaged in agriculture, depending on the country. By the 19th century in Europe, this had dropped to between 35 and 65 percent.[57] In the same countries today, the figure is less than 10%.[56]

Safety[edit]

Rollover protection bar on a Fordson tractor
Main article: Agricultural safety and health
Agriculture, specifically farming, remains a hazardous industry, and farmers worldwide remain at high risk of work-related injuries, lung disease, noise-induced hearing loss, skin diseases, as well as certain cancers related to chemical use and prolonged sun exposure. On industrialized farms, injuries frequently involve the use of agricultural machinery, and a common cause of fatal agricultural injuries in developed countries is tractor rollovers.[58] Pesticides and other chemicals used in farming can also be hazardous to worker health, and workers exposed to pesticides may experience illness or have children with birth defects.[59] As an industry in which families commonly share in work and live on the farm itself, entire families can be at risk for injuries, illness, and death.[60] Common causes of fatal injuries among young farm workers include drowning, machinery and motor vehicle-related accidents.[60]

The International Labour Organization considers agriculture "one of the most hazardous of all economic sectors."[54] It estimates that the annual work-related death toll among agricultural employees is at least 170,000, twice the average rate of other jobs. In addition, incidences of death, injury and illness related to agricultural activities often go unreported.[61] The organization has developed the Safety and Health in Agriculture Convention, 2001, which covers the range of risks in the agriculture occupation, the prevention of these risks and the role that individuals and organizations engaged in agriculture should play.[54]

Agricultural production systems[edit]
Crop cultivation systems[edit]

Rice cultivation in Andhra Pradesh, India
Cropping systems vary among farms depending on the available resources and constraints; geography and climate of the farm; government policy; economic, social and political pressures; and the philosophy and culture of the farmer.[62][63]

Shifting cultivation (or slash and burn) is a system in which forests are burnt, releasing nutrients to support cultivation of annual and then perennial crops for a period of several years.[64] Then the plot is left fallow to regrow forest, and the farmer moves to a new plot, returning after many more years (10–20). This fallow period is shortened if population density grows, requiring the input of nutrients (fertilizer or manure) and some manual pest control. Annual cultivation is the next phase of intensity in which there is no fallow period. This requires even greater nutrient and pest control inputs.

Further industrialization led to the use of monocultures, when one cultivar is planted on a large acreage. Because of the low biodiversity, nutrient use is uniform and pests tend to build up, necessitating the greater use of pesticides and fertilizers.[63] Multiple cropping, in which several crops are grown sequentially in one year, and intercropping, when several crops are grown at the same time, are other kinds of annual cropping systems known as polycultures.[64]

In subtropical and arid environments, the timing and extent of agriculture may be limited by rainfall, either not allowing multiple annual crops in a year, or requiring irrigation. In all of these environments perennial crops are grown (coffee, chocolate) and systems are practiced such as agroforestry. In temperate environments, where ecosystems were predominantly grassland or prairie, highly productive annual farming is the dominant agricultural system.[64]

Crop statistics[edit]
See also: List of most important agricultural crops worldwide
Important categories of crops include cereals and pseudocereals, pulses (legumes), forage, and fruits and vegetables. Specific crops are cultivated in distinct growing regions throughout the world. In millions of metric tons, based on FAO estimate.


Livestock production systems[edit]
Main article: Livestock
See also: List of domesticated animals

Ploughing rice paddy fields with water buffalo, in Indonesia
Animals, including horses, mules, oxen, water buffalo, camels, llamas, alpacas, donkeys, and dogs, are often used to help cultivate fields, harvest crops, wrangle other animals, and transport farm products to buyers. Animal husbandry not only refers to the breeding and raising of animals for meat or to harvest animal products (like milk, eggs, or wool) on a continual basis, but also to the breeding and care of species for work and companionship.


An ox-pulled plough in India
Livestock production systems can be defined based on feed source, as grassland-based, mixed, and landless.[66] As of 2010, 30% of Earth's ice- and water-free area was used for producing livestock, with the sector employing approximately 1.3 billion people. Between the 1960s and the 2000s, there was a significant increase in livestock production, both by numbers and by carcass weight, especially among beef, pigs and chickens, the latter of which had production increased by almost a factor of 10. Non-meat animals, such as milk cows and egg-producing chickens, also showed significant production increases. Global cattle, sheep and goat populations are expected to continue to increase sharply through 2050.[67] Aquaculture or fish farming, the production of fish for human consumption in confined operations, is one of the fastest growing sectors of food production, growing at an average of 9% a year between 1975 and 2007.[68]

During the second half of the 20th century, producers using selective breeding focused on creating livestock breeds and crossbreeds that increased production, while mostly disregarding the need to preserve genetic diversity. This trend has led to a significant decrease in genetic diversity and resources among livestock breeds, leading to a corresponding decrease in disease resistance and local adaptations previously found among traditional breeds.[69]

Grassland based livestock production relies upon plant material such as shrubland, rangeland, and pastures for feeding ruminant animals. Outside nutrient inputs may be used, however manure is returned directly to the grassland as a major nutrient source. This system is particularly important in areas where crop production is not feasible because of climate or soil, representing 30–40 million pastoralists.[64] Mixed production systems use grassland, fodder crops and grain feed crops as feed for ruminant and monogastric (one stomach; mainly chickens and pigs) livestock. Manure is typically recycled in mixed systems as a fertilizer for crops.[66]

Landless systems rely upon feed from outside the farm, representing the de-linking of crop and livestock production found more prevalently in Organisation for Economic Co-operation and Development(OECD) member countries. Synthetic fertilizers are more heavily relied upon for crop production and manure utilization becomes a challenge as well as a source for pollution.[66] Industrialized countries use these operations to produce much of the global supplies of poultry and pork. Scientists estimate that 75% of the growth in livestock production between 2003 and 2030 will be in confined animal feeding operations, sometimes called factory farming. Much of this growth is happening in developing countries in Asia, with much smaller amounts of growth in Africa.[67] Some of the practices used in commercial livestock production, including the usage of growth hormones, are controversial.[70]

Production practices[edit]

Road leading across the farm allows machinery access to the farm for production practices
Farming is the practice of agriculture by specialized labor in an area primarily devoted to agricultural processes, in service of a dislocated population usually in a city.

Tillage is the practice of plowing soil to prepare for planting or for nutrient incorporation or for pest control. Tillage varies in intensity from conventional to no-till. It may improve productivity by warming the soil, incorporating fertilizer and controlling weeds, but also renders soil more prone to erosion, triggers the decomposition of organic matter releasing CO2, and reduces the abundance and diversity of soil organisms.[71][72]

Pest control includes the management of weeds, insects, mites, and diseases. Chemical (pesticides), biological (biocontrol), mechanical (tillage), and cultural practices are used. Cultural practices include crop rotation, culling, cover crops, intercropping, composting, avoidance, and resistance. Integrated pest management attempts to use all of these methods to keep pest populations below the number which would cause economic loss, and recommends pesticides as a last resort.[73]

Nutrient management includes both the source of nutrient inputs for crop and livestock production, and the method of utilization of manure produced by livestock. Nutrient inputs can be chemical inorganic fertilizers, manure, green manure, compost and mined minerals.[74] Crop nutrient use may also be managed using cultural techniques such as crop rotation or a fallow period.[75][76] Manure is used either by holding livestock where the feed crop is growing, such as in managed intensive rotational grazing, or by spreading either dry or liquid formulations of manure on cropland or pastures.

Water management is needed where rainfall is insufficient or variable, which occurs to some degree in most regions of the world.[64] Some farmers use irrigation to supplement rainfall. In other areas such as the Great Plains in the U.S. and Canada, farmers use a fallow year to conserve soil moisture to use for growing a crop in the following year.[77] Agriculture represents 70% of freshwater use worldwide.[78]

According to a report by the International Food Policy Research Institute, agricultural technologies will have the greatest impact on food production if adopted in combination with each other; using a model that assessed how eleven technologies could impact agricultural productivity, food security and trade by 2050, the International Food Policy Research Institute found that the number of people at risk from hunger could be reduced by as much as 40% and food prices could be reduced by almost half.[79]

"Payment for ecosystem services (PES) can further incentivise efforts to green the agriculture sector. This is an approach that verifies values and rewards the benefits of ecosystem services provided by green agricultural practices."[80] "Innovative PES measures could include reforestation payments made by cities to upstream communities in rural areas of shared watersheds for improved quantities and quality of fresh water for municipal users. Ecoservice payments by farmers to upstream forest stewards for properly managing the flow of soil nutrients, and methods to monetise the carbon sequestration and emission reduction credit benefits of green agriculture practices in order to compensate farmers for their efforts to restore and build SOM and employ other practices."[80]

Crop alteration and biotechnology[edit]
Main article: Plant breeding

Tractor and chaser bin
Crop alteration has been practiced by humankind for thousands of years, since the beginning of civilization. Altering crops through breeding practices changes the genetic make-up of a plant to develop crops with more beneficial characteristics for humans, for example, larger fruits or seeds, drought-tolerance, or resistance to pests. Significant advances in plant breeding ensued after the work of geneticist Gregor Mendel. His work on dominant and recessive alleles, although initially largely ignored for almost 50 years, gave plant breeders a better understanding of genetics and breeding techniques. Crop breeding includes techniques such as plant selection with desirable traits, self-pollination and cross-pollination, and molecular techniques that genetically modify the organism.[81]

Domestication of plants has, over the centuries increased yield, improved disease resistance and drought tolerance, eased harvest and improved the taste and nutritional value of crop plants. Careful selection and breeding have had enormous effects on the characteristics of crop plants. Plant selection and breeding in the 1920s and 1930s improved pasture (grasses and clover) in New Zealand. Extensive X-ray and ultraviolet induced mutagenesis efforts (i.e. primitive genetic engineering) during the 1950s produced the modern commercial varieties of grains such as wheat, corn (maize) and barley.[82][83]

The Green Revolution popularized the use of conventional hybridization to sharply increase yield by creating "high-yielding varieties". For example, average yields of corn (maize) in the US have increased from around 2.5 tons per hectare (t/ha) (40 bushels per acre) in 1900 to about 9.4 t/ha (150 bushels per acre) in 2001. Similarly, worldwide average wheat yields have increased from less than 1 t/ha in 1900 to more than 2.5 t/ha in 1990. South American average wheat yields are around 2 t/ha, African under 1 t/ha, and Egypt and Arabia up to 3.5 to 4 t/ha with irrigation. In contrast, the average wheat yield in countries such as France is over 8 t/ha. Variations in yields are due mainly to variation in climate, genetics, and the level of intensive farming techniques (use of fertilizers, chemical pest control, growth control to avoid lodging).[84][85][86]

Genetic engineering[edit]
Main article: Genetic engineering
See also: Genetically modified food, Genetically modified crops, Regulation of the release of genetic modified organisms, and Genetically modified food controversies
Genetically modified organisms (GMO) are organisms whose genetic material has been altered by genetic engineering techniques generally known as recombinant DNA technology. Genetic engineering has expanded the genes available to breeders to utilize in creating desired germlines for new crops. Increased durability, nutritional content, insect and virus resistance and herbicide tolerance are a few of the attributes bred into crops through genetic engineering.[87] For some, GMO crops cause food safety and food labeling concerns. Numerous countries have placed restrictions on the production, import or use of GMO foods and crops, which have been put in place due to concerns over potential health issues, declining agricultural diversity and contamination of non-GMO crops.[88] Currently a global treaty, the Biosafety Protocol, regulates the trade of GMOs. There is ongoing discussion regarding the labeling of foods made from GMOs, and while the EU currently requires all GMO foods to be labeled, the US does not.[89]

Herbicide-resistant seed has a gene implanted into its genome that allows the plants to tolerate exposure to herbicides, including glyphosates. These seeds allow the farmer to grow a crop that can be sprayed with herbicides to control weeds without harming the resistant crop. Herbicide-tolerant crops are used by farmers worldwide.[90] With the increasing use of herbicide-tolerant crops, comes an increase in the use of glyphosate-based herbicide sprays. In some areas glyphosate resistant weeds have developed, causing farmers to switch to other herbicides.[91][92] Some studies also link widespread glyphosate usage to iron deficiencies in some crops, which is both a crop production and a nutritional quality concern, with potential economic and health implications.[93]

Other GMO crops used by growers include insect-resistant crops, which have a gene from the soil bacterium Bacillus thuringiensis (Bt), which produces a toxin specific to insects. These crops protect plants from damage by insects.[94] Some believe that similar or better pest-resistance traits can be acquired through traditional breeding practices, and resistance to various pests can be gained through hybridization or cross-pollination with wild species. In some cases, wild species are the primary source of resistance traits; some tomato cultivars that have gained resistance to at least 19 diseases did so through crossing with wild populations of tomatoes.[95]

Environmental impact[edit]
Main article: Environmental issues with agriculture

Water pollution in a rural stream due to runoff from farming activity in New Zealand
Agriculture, as implemented through the method of farming, imposes external costs upon society through pesticides, nutrient runoff, excessive water usage, loss of natural environment and assorted other problems. A 2000 assessment of agriculture in the UK determined total external costs for 1996 of £2,343 million, or £208 per hectare.[96] A 2005 analysis of these costs in the USA concluded that cropland imposes approximately $5 to 16 billion ($30 to $96 per hectare), while livestock production imposes $714 million.[97] Both studies, which focused solely on the fiscal impacts, concluded that more should be done to internalize external costs. Neither included subsidies in their analysis, but they noted that subsidies also influence the cost of agriculture to society.[96][97] In 2010, the International Resource Panel of the United Nations Environment Programme published a report assessing the environmental impacts of consumption and production. The study found that agriculture and food consumption are two of the most important drivers of environmental pressures, particularly habitat change, climate change, water use and toxic emissions.[98] The 2011 UNEP Green Economy report states that "[a]gricultural operations, excluding land use changes, produce approximately 13 per cent of anthropogenic global GHG emissions. This includes GHGs emitted by the use of inorganic fertilisers agro-chemical pesticides and herbicides; (GHG emissions resulting from production of these inputs are included in industrial emissions); and fossil fuel-energy inputs.[80] "On average we find that the total amount of fresh residues from agricultural and forestry production for second- generation biofuel production amounts to 3.8 billion tonnes per year between 2011 and 2050 (with an average annual growth rate of 11 per cent throughout the period analysed, accounting for higher growth during early years, 48 per cent for 2011–2020 and an average 2 per cent annual expansion after 2020)."[80]

Livestock issues[edit]
A senior UN official and co-author of a UN report detailing this problem, Henning Steinfeld, said "Livestock are one of the most significant contributors to today's most serious environmental problems".[99] Livestock production occupies 70% of all land used for agriculture, or 30% of the land surface of the planet. It is one of the largest sources of greenhouse gases, responsible for 18% of the world's greenhouse gas emissions as measured in CO2 equivalents. By comparison, all transportation emits 13.5% of the CO2. It produces 65% of human-related nitrous oxide (which has 296 times the global warming potential of CO2,) and 37% of all human-induced methane (which is 23 times as warming as CO2.) It also generates 64% of the ammonia emission. Livestock expansion is cited as a key factor driving deforestation; in the Amazon basin 70% of previously forested area is now occupied by pastures and the remainder used for feedcrops.[100] Through deforestation and land degradation, livestock is also driving reductions in biodiversity. Furthermore, the UNEP states that "methane emissions from global livestock are projected to increase by 60 per cent by 2030 under current practices and consumption patterns."[80]

Land and water issues[edit]
See also: Environmental impact of irrigation

Water control in field lands, laid connected with together
Land transformation, the use of land to yield goods and services, is the most substantial way humans alter the Earth's ecosystems, and is considered the driving force in the loss of biodiversity. Estimates of the amount of land transformed by humans vary from 39 to 50%.[101] Land degradation, the long-term decline in ecosystem function and productivity, is estimated to be occurring on 24% of land worldwide, with cropland overrepresented.[102] The UN-FAO report cites land management as the driving factor behind degradation and reports that 1.5 billion people rely upon the degrading land. Degradation can be deforestation, desertification, soil erosion, mineral depletion, or chemical degradation (acidification and salinization).[64]

Eutrophication, excessive nutrients in aquatic ecosystems resulting in algal blooms and anoxia, leads to fish kills, loss of biodiversity, and renders water unfit for drinking and other industrial uses. Excessive fertilization and manure application to cropland, as well as high livestock stocking densities cause nutrient (mainly nitrogen and phosphorus) runoff and leaching from agricultural land. These nutrients are major nonpoint pollutants contributing to eutrophication of aquatic ecosystems.[103]

Agriculture accounts for 70 percent of withdrawals of freshwater resources.[104] Agriculture is a major draw on water from aquifers, and currently draws from those underground water sources at an unsustainable rate. It is long known that aquifers in areas as diverse as northern China, the Upper Ganges and the western US are being depleted, and new research extends these problems to aquifers in Iran, Mexico and Saudi Arabia.[105] Increasing pressure is being placed on water resources by industry and urban areas, meaning that water scarcity is increasing and agriculture is facing the challenge of producing more food for the world's growing population with reduced water resources.[106] Agricultural water usage can also cause major environmental problems, including the destruction of natural wetlands, the spread of water-borne diseases, and land degradation through salinization and waterlogging, when irrigation is performed incorrectly.[107]

Pesticides[edit]
Main article: Environmental impact of pesticides
Pesticide use has increased since 1950 to 2.5 million short tons annually worldwide, yet crop loss from pests has remained relatively constant.[108] The World Health Organization estimated in 1992 that 3 million pesticide poisonings occur annually, causing 220,000 deaths.[109] Pesticides select for pesticide resistance in the pest population, leading to a condition termed the "pesticide treadmill" in which pest resistance warrants the development of a new pesticide.[110]

An alternative argument is that the way to "save the environment" and prevent famine is by using pesticides and intensive high yield farming, a view exemplified by a quote heading the Center for Global Food Issues website: 'Growing more per acre leaves more land for nature'.[111][112] However, critics argue that a trade-off between the environment and a need for food is not inevitable,[113] and that pesticides simply replace good agronomic practices such as crop rotation.[110] The UNEP introduces the Push–pull agricultural pest management technique which involves intercropping that uses plant aromas to repel or push away pests while pulling in or attracting the right insects. "The implementation of push-pull in eastern Africa has significantly increased maize yields and the combined cultivation of N-fixing forage crops has enriched the soil and has also provided farmers with feed for livestock. With increased livestock operations, the farmers are able to produce meat, milk and other dairy products and they use the manure as organic fertiliser that returns nutrients to the fields."[80]

Climate change[edit]
See also: Climate change and agriculture
Climate change has the potential to affect agriculture through changes in temperature, rainfall (timing and quantity), CO2, solar radiation and the interaction of these elements.[64] Extreme events, such as droughts and floods, are forecast to increase as climate change takes hold.[114] Agriculture is among sectors most vulnerable to the impacts of climate change; water supply for example, will be critical to sustain agricultural production and provide the increase in food output required to sustain the world's growing population. Fluctuations in the flow of rivers are likely to increase in the twenty-first century. Based on the experience of countries in the Nile river basin (Ethiopia, Kenya and Sudan) and other developing countries, depletion of water resources during seasons crucial for agriculture can lead to a decline in yield by up to 50%.[115] Transformational approaches will be needed to manage natural resources in the future.[116] For example, policies, practices and tools promoting climate-smart agriculture will be important, as will better use of scientific information on climate for assessing risks and vulnerability. Planners and policy-makers will need to help create suitable policies that encourage funding for such agricultural transformation.[117]

Agriculture in its many forms can both mitigate or worsen global warming. Some of the increase in CO2 in the atmosphere comes from the decomposition of organic matter in the soil, and much of the methane emitted into the atmosphere is caused by the decomposition of organic matter in wet soils such as rice paddy fields,[118] as well as the normal digestive activities of farm animals. Further, wet or anaerobic soils also lose nitrogen through denitrification, releasing the greenhouse gases nitric oxide and nitrous oxide.[119] Changes in management can reduce the release of these greenhouse gases, and soil can further be used to sequester some of the CO2 in the atmosphere.[118] Informed by the UNEP, "[a]griculture also produces about 58 per cent of global nitrous oxide emissions and about 47 per cent of global methane emissions. Cattle and rice farms release methane, fertilized fields release nitrous oxide, and the cutting down of rainforests to grow crops or raise livestock releases carbon dioxide.[120] Both of these gases have a far greater global warming potential per tonne than CO2 (298 times and 25 times respectively)."[80]

There are several factors within the field of agriculture that contribute to the large amount of CO2 emissions. The diversity of the sources ranges from the production of farming tools to the transport of harvested produce. Approximately 8% of the national carbon footprint is due to agricultural sources. Of that, 75% is of the carbon emissions released from the production of crop assisting chemicals.[121] Factories producing insecticides, herbicides, fungicides, and fertilizers are a major culprit of the greenhouse gas. Productivity on the farm itself and the use of machinery is another source of the carbon emission. Almost all the industrial machines used in modern farming are powered by fossil fuels. These instruments are burning fossil fuels from the beginning of the process to the end. Tractors are the root of this source. The tractor is going to burn fuel and release CO2 just to run. The amount of emissions from the machinery increase with the attachment of different units and need for more power. During the soil preparation stage tillers and plows will be used to disrupt the soil. During growth watering pumps and sprayers are used to keep the crops hydrated. And when the crops are ready for picking a forage or combine harvester is used. These types of machinery all require additional energy which leads to increased carbon dioxide emissions from the basic tractors.[122] The final major contribution to CO2 emissions in agriculture is in the final transport of produce. Local farming suffered a decline over the past century due to large amounts of farm subsidies. The majority of crops are shipped hundreds of miles to various processing plants before ending up in the grocery store. These shipments are made using fossil fuel burning modes of transportation. Inevitably these transport adds to carbon dioxide emissions.[123]

Sustainability[edit]
See also: List of sustainable agriculture topics
Some major organizations are hailing farming within agroecosystems as the way forward for mainstream agriculture. Current farming methods have resulted in over-stretched water resources, high levels of erosion and reduced soil fertility. According to a report by the International Water Management Institute and UNEP,[124] there is not enough water to continue farming using current practices; therefore how critical water, land, and ecosystem resources are used to boost crop yields must be reconsidered. The report suggested assigning value to ecosystems, recognizing environmental and livelihood tradeoffs, and balancing the rights of a variety of users and interests. Inequities that result when such measures are adopted would need to be addressed, such as the reallocation of water from poor to rich, the clearing of land to make way for more productive farmland, or the preservation of a wetland system that limits fishing rights.[125]

Technological advancements help provide farmers with tools and resources to make farming more sustainable.[126] New technologies have given rise to innovations like conservation tillage, a farming process which helps prevent land loss to erosion, water pollution and enhances carbon sequestration.[127]

According to a report by the International Food Policy Research Institute (IFPRI),[79] agricultural technologies will have the greatest impact on food production if adopted in combination with each other; using a model that assessed how eleven technologies could impact agricultural productivity, food security and trade by 2050, IFPRI found that the number of people at risk from hunger could be reduced by as much as 40% and food prices could be reduced by almost half.

Agricultural economics[edit]
Main article: Agricultural economics
See also: Agricultural subsidy and Rural economics
Agricultural economics refers to economics as it relates to the "production, distribution and consumption of [agricultural] goods and services".[128] Combining agricultural production with general theories of marketing and business as a discipline of study began in the late 1800s, and grew significantly through the 20th century.[129] Although the study of agricultural economics is relatively recent, major trends in agriculture have significantly affected national and international economies throughout history, ranging from tenant farmers and sharecropping in the post-American Civil War Southern United States[130] to the European feudal system of manorialism.[131] In the United States, and elsewhere, food costs attributed to food processing, distribution, and agricultural marketing, sometimes referred to as the value chain, have risen while the costs attributed to farming have declined. This is related to the greater efficiency of farming, combined with the increased level of value addition (e.g. more highly processed products) provided by the supply chain. Market concentration has increased in the sector as well, and although the total effect of the increased market concentration is likely increased efficiency, the changes redistribute economic surplus from producers (farmers) and consumers, and may have negative implications for rural communities.[132]

National government policies can significantly change the economic marketplace for agricultural products, in the form of taxation, subsidies, tariffs and other measures.[133] Since at least the 1960s, a combination of import/export restrictions, exchange rate policies and subsidies have affected farmers in both the developing and developed world. In the 1980s, it was clear that non-subsidized farmers in developing countries were experiencing adverse effects from national policies that created artificially low global prices for farm products. Between the mid-1980s and the early 2000s, several international agreements were put into place that limited agricultural tariffs, subsidies and other trade restrictions.[134]

However, as of 2009, there was still a significant amount of policy-driven distortion in global agricultural product prices. The three agricultural products with the greatest amount of trade distortion were sugar, milk and rice, mainly due to taxation. Among the oilseeds, sesame had the greatest amount of taxation, but overall, feed grains and oilseeds had much lower levels of taxation than livestock products. Since the 1980s, policy-driven distortions have seen a greater decrease among livestock products than crops during the worldwide reforms in agricultural policy.[135] Despite this progress, certain crops, such as cotton, still see subsidies in developed countries artificially deflating global prices, causing hardship in developing countries with non-subsidized farmers.[136] Unprocessed commodities (i.e. corn, soybeans, cows) are generally graded to indicate quality. The quality affects the price the producer receives. Commodities are generally reported by production quantities, such as volume, number or weight.[137]

Agricultural science[edit]
Main article: Agricultural science
Agricultural science is a broad multidisciplinary field of biology that encompasses the parts of exact, natural, economic and social sciences that are used in the practice and understanding of agriculture. (Veterinary science, but not animal science, is often excluded from the definition.)

Energy and agriculture[edit]
Since the 1940s, agricultural productivity has increased dramatically, due largely to the increased use of energy-intensive mechanization, fertilizers and pesticides. The vast majority of this energy input comes from fossil fuel sources.[139] Between the 1960–65 measuring cycle and the cycle from 1986 to 1990, the Green Revolution transformed agriculture around the globe, with world grain production increasing significantly (between 70% and 390% for wheat and 60% to 150% for rice, depending on geographic area)[140] as world population doubled. Modern agriculture's heavy reliance on petrochemicals and mechanization has raised concerns that oil shortages could increase costs and reduce agricultural output, causing food shortages.[141]

Agriculture and food system share (%) of total energy
consumption by three industrialized nations
Country Year Agriculture
(direct & indirect) Food
system
United Kingdom[142] 2005 1.9 11
United States[143] 2002 2.0 14
Sweden[144] 2000 2.5 13
Modern or industrialized agriculture is dependent on fossil fuels in two fundamental ways: 1. direct consumption on the farm and 2. indirect consumption to manufacture inputs used on the farm. Direct consumption includes the use of lubricants and fuels to operate farm vehicles and machinery; and use of gasoline, liquid propane, and electricity to power dryers, pumps, lights, heaters, and coolers. American farms directly consumed about 1.2 exajoules (1.1 quadrillion BTU) in 2002, or just over 1% of the nation's total energy.[141]

Indirect consumption is mainly oil and natural gas used to manufacture fertilizers and pesticides, which accounted for 0.6 exajoules (0.6 quadrillion BTU) in 2002.[141] The natural gas and coal consumed by the production of nitrogen fertilizer can account for over half of the agricultural energy usage. China utilizes mostly coal in the production of nitrogen fertilizer, while most of Europe uses large amounts of natural gas and small amounts of coal. According to a 2010 report published by The Royal Society, agriculture is increasingly dependent on the direct and indirect input of fossil fuels. Overall, the fuels used in agriculture vary based on several factors, including crop, production system and location.[145] The energy used to manufacture farm machinery is also a form of indirect agricultural energy consumption. Together, direct and indirect consumption by US farms accounts for about 2% of the nation's energy use. Direct and indirect energy consumption by U.S. farms peaked in 1979, and has gradually declined over the past 30 years.[141] Food systems encompass not just agricultural production, but also off-farm processing, packaging, transporting, marketing, consumption, and disposal of food and food-related items. Agriculture accounts for less than one-fifth of food system energy use in the US.[146][143]

Mitigation of effects of petroleum shortages[edit]

M. King Hubbert's prediction of world petroleum production rates. Modern agriculture is totally reliant on petroleum energy[147]
In the event of a petroleum shortage (see peak oil for global concerns), organic agriculture can be more attractive than conventional practices that use petroleum-based pesticides, herbicides, or fertilizers. Some studies using modern organic-farming methods have reported yields equal to or higher than those available from conventional farming.[148] In the aftermath of the fall of the Soviet Union, with shortages of conventional petroleum-based inputs, Cuba made use of mostly organic practices, including biopesticides, plant-based pesticides and sustainable cropping practices, to feed its populace.[149] However, organic farming may be more labor-intensive and would require a shift of the workforce from urban to rural areas.[150] The reconditioning of soil to restore organic matter lost during the use of monoculture agriculture techniques is important to provide a reservoir of plant-available nutrients, to maintain texture, and to minimize erosion.[151]

It has been suggested that rural communities might obtain fuel from the biochar and synfuel process, which uses agricultural waste to provide charcoal fertilizer, some fuel and food, instead of the normal food vs. fuel debate. As the synfuel would be used on-site, the process would be more efficient and might just provide enough fuel for a new organic-agriculture fusion.[152][153]

It has been suggested that some transgenic plants may some day be developed which would allow for maintaining or increasing yields while requiring fewer fossil-fuel-derived inputs than conventional crops.[154] The possibility of success of these programs is questioned by ecologists and economists concerned with unsustainable GMO practices such as terminator seeds.[155][156] While there has been some research on sustainability using GMO crops, at least one prominent multi-year attempt by Monsanto Company has been unsuccessful, though during the same period traditional breeding techniques yielded a more sustainable variety of the same crop.[157]

Policy[edit]
Main article: Agricultural policy

From a Congressional Budget Office report
Agricultural policy is the set of government decisions and actions relating to domestic agriculture and imports of foreign agricultural products. Governments usually implement agricultural policies with the goal of achieving a specific outcome in the domestic agricultural product markets. Some overarching themes include risk management and adjustment (including policies related to climate change, food safety and natural disasters), economic stability (including policies related to taxes), natural resources and environmental sustainability (especially water policy), research and development, and market access for domestic commodities (including relations with global organizations and agreements with other countries).[158] Agricultural policy can also touch on food quality, ensuring that the food supply is of a consistent and known quality, food security, ensuring that the food supply meets the population's needs, and conservation. Policy programs can range from financial programs, such as subsidies, to encouraging producers to enroll in voluntary quality assurance programs.[159]

There are many influences on the creation of agricultural policy, including consumers, agribusiness, trade lobbies and other groups. Agribusiness interests hold a large amount of influence over policy making, in the form of lobbying and campaign contributions. Political action groups, including those interested in environmental issues and labor unions, also provide influence, as do lobbying organizations representing individual agricultural commodities.[160] The Food and Agriculture Organization of the United Nations (FAO) leads international efforts to defeat hunger and provides a forum for the negotiation of global agricultural regulations and agreements. Dr. Samuel Jutzi, director of FAO's animal production and health division, states that lobbying by large corporations has stopped reforms that would improve human health and the environment. For example, proposals in 2010 for a voluntary code of conduct for the livestock industry that would have provided incentives for improving standards for health, and environmental regulations, such as the number of animals an area of land can support without long-term damage, were successfully defeated due to large food company pressure.